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Detailed information on CNT30223937


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7M1L0|CB23C_PEA, E-value = 4e-06

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677497Hordeum vulgareSetaria viridis28.428.5192.86140forward
CNT30722048Hordeum vulgareTriticum spelta52.1360.989.49257forward

Expression of CNT30223937

Peptides detected in this lncRNA

>peptide 1 (67 aa)
THNPSIHSLVHTLCSINLHCAQLGRGHLARSMMMMIQINTQSTCSYTLIHDVQVHMHISSDGQTDGC*

>peptide 2 (73 aa)
MRPFLSSLTLSSAAVSGPPSEKICAPALNQTASPNLMPFLDRISGNTHPRAPSIAHREWITSSSLFLAKVSGSA

Sequence

>CNT30223937
ACACACAATCCTTCCATCCATTCGCTCGTGCACACCTTGTGCTCAATTAATTTACATTGCGCACAGCTAGGGAGAGGGCATCTCGCTCGCTCGATGATGA
TGATGATACAAATAAACACACAAAGTACGTGCAGCTACACGTTGATCCACGACGTACAAGTACACATGCATATCTCGTCCGATGGACAGACGGATGGCTG
CTAAACACATTTAACTTCCGGGGGCGAAGTTGGTGGCGAAGGCCCACGCGTTGTTGTTCACTGGGTCGGCGATGCGGCCGTTCTTGAGCTCCTTGACCTT
GAGCTCGGCGGCTGTGTCGGGGCCGCCCTCGGAGAAGATCTGCGCGCCGGCCTTGAACCAGACAGCCTCGCCGAACTTGATGCCGTTCTTGGACAGGATC
TCGGGGAACACGCACCCGAGGGCTCCGAGCATCGCCCACCGCGAGTGGATCACCTCCAGCTCCCTGTTCTTGGCGAAGGTCTCTGGGTCAGCC