Detailed information on CNT30223925


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9XF87|CB24_ARATH, E-value = 9e-32

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30188104Hordeum vulgareSecale cereale77.1661.0890.21419forward
CNT30298483Hordeum vulgareTriticum aestivum77.7268.1791.23422forward
CNT30393859Hordeum vulgareTriticum turgidum94.6666.9390.66514forward
CNT30440221Hordeum vulgareAegilops tauschii31.8655.6394.8173forward
CNT30665487Hordeum vulgareTriticum dicoccoides76.4343.3691.81415forward
CNT30142779Hordeum vulgareLolium perenne54.5133.3789.53296forward
CNT30685208Hordeum vulgareTriticum urartu97.9751.889.1532forward

Expression of CNT30223925

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MMMMIQINTQSTCSYTLIHDVQVHMHISSDGQTDGC*

>peptide 2 (44 aa)
MWSKRFSTGPFPVTMACTKKPNMENMARRPFLSSLTLSSAAVSG*

Sequence

>CNT30223925
ATATACCATATACGCCGTGACACTGGTTGATGTGGAGTATTGACACACAATCCTTCCATCCATTCGCTCGTGCACACCTTGTGCTCAATTAATTTACATT
GCGCACAGCTAGGGAGAGGGCATCTCGCTCGCTCGATGATGATGATGATACAAATAAACACACAAAGTACGTGCAGCTACACGTTGATCCACGACGTACA
AGTACACATGCATATCTCGTCCGATGGACAGACGGATGGCTGCTAAACACATTTAACTTCCGGGGGCGAAGTTGGTGGCGAAGGCCCACGCGTTGTTGTT
CACTGGGTCGGCGATGTGGTCGAAGAGGTTCTCAACCGGTCCCTTTCCGGTGACGATGGCCTGCACGAAGAAGCCGAACATGGAGAACATGGCGAGGCGG
CCGTTCTTGAGCTCCTTGACCTTGAGCTCGGCGGCTGTGTCGGGGTAGTCGAGGCCGCCCTCGGAGAAGATCTGCGCGCCGGCCTTGAACCAGACAGCCT
CGCCGAACTTGATGCCGTTCTTGGACAGGATCTCGGGGAACAC