Detailed information on CNT30223857


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692523Hordeum vulgareOryza sativa61.5113.1189.68155forward
CNT30519701Hordeum vulgareSetaria italica47.228.7689.08119forward
CNT30185311Hordeum vulgareSecale cereale57.5410.3190.34145forward
CNT30298786Hordeum vulgareTriticum aestivum47.2245.4294.96119forward
CNT30139766Hordeum vulgareLolium perenne59.1330.4188.59149forward
CNT301996Hordeum vulgareZea mays42.0624.3191.51106forward
CNT30347748Hordeum vulgareEragrostis tef42.0615.2188.68106forward
CNT30369978Hordeum vulgareOryza glumipatula47.2215.8592.44119forward
CNT30575497Hordeum vulgareOryza barthii47.229.4992.44119forward

Expression of CNT30223857

Peptides detected in this lncRNA

>peptide 1 (41 aa)
AVLVVRVDGLDVEGPLRVVSGGDGVGEVLGGVAVGFQWNLT*

Sequence

>CNT30223857
GCGGTCCTCGTGGTCCGGGTCGATGGTCTGGATGTAGAAGGTCCACTCCGGGTAGTTTCCGGCGGCGATGGAGTCGGTGAGGTCCTTGGTGGCGTGGCTG
TGGGCTTCCAGTGGAACTTGACGTAGTGCGCCTTGCCGGCGCGGTTGACGAGGACGGGGAAGTTGTTGCCGACAAGGTCCCAGTTGCCCTCCCGGGTGTA
GAACTTGATGGCGAAGCCGCGCGGGTCGCGGAGCGTCTCCGGGGAGCCGCGC