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Detailed information on CNT30223824


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30187954Hordeum vulgareSecale cereale32.5416.2582.93246forward

Expression of CNT30223824

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MISQYGFKRVWSEASLSYWSHETCLSQDS*

>peptide 2 (70 aa)
TSSCALARAWMRLVMWQFCPSHLLPSWCLLSDVDLFDLATDKSWCLLSDVDLFDLATDKFRSSPSEMYMD*

>peptide 3 (44 aa)
MSISLIWPLTSHGVYCRMSISLIWPLTSFGLHRQRCIWIDARRS*

Sequence

>CNT30223824
CACTTCTAGCTGCGCACTGGCCAGGGCTTGGATGCGCTTGGTGATGTGGCAGTTTTGCCCTAGCCATCTTCTTCCGTCATGGTGTCTACTGTCGGATGTC
GATCTCTTTGATCTGGCCACTGACAAGTCATGGTGTCTACTGTCGGATGTCGATCTCTTTGATCTGGCCACTGACAAGTTTCGGTCTTCACCGTCAGAGA
TGTATATGGATTGACGCACGTCGCTCTTGAATCTAGATCAAAAAGGCTCCGGTCGCGCGCGCTCATATGATCAGCCAATACGGTTTCAAGAGGGTGTGGA
GCGAAGCTTCGCTTTCTTATTGGAGTCATGAGACATGTCTAAGTCAAGATTCCTAGGGCATTGATAGAGGTGGAGGAAGTCATGGCAGCTGTGATTGGAG
GTCTTGAAGCGTTGGCGGAAAGGTGTAGCGGATGCGATGAAGACAGTGTGCTAGGTGTTTGGTGACTTGCAACAGCGGCCTCGGCAAGCGGGGGCGACAA
TACTGGAGGTCTACAATTTTGGTGGTGCTCCTCGAGTATCGATTCTTGATTCCGAGGATGAAAACTCAAGGTTAAGTAACCTCTCCTGTTGGCTACTAGA
ACTTGAAGTAAACCTTGAGGGTTGGAGTTCAAACCTCTTGTAGCGTACATTTTGTAAGATTAAAAGGAAAAGGGGGAAAAGTACGTTGGTACGTGCACAA
GCCGCGTATCTATTCGGCTGACGTATTTATGAATCCATCAGTGTTTAACATGGCAT