Detailed information on CNT30223766


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697171Hordeum vulgareOryza sativa29.6941.6292.36144forward
CNT30676857Hordeum vulgareSetaria viridis15.8821.1597.477forward
CNT30184672Hordeum vulgareSecale cereale38.9757.2795.77189forward
CNT30297243Hordeum vulgareTriticum aestivum48.6679.1997.03236forward
CNT30390938Hordeum vulgareTriticum turgidum57.9453.5294.31281forward
CNT30439786Hordeum vulgareAegilops tauschii51.5571.0296.8250forward
CNT30256287Hordeum vulgareAvena sativa38.3542.9687.1186forward
CNT30371248Hordeum vulgareOryza glumipatula29.4832.590.91143forward
CNT30150882Hordeum vulgareBrachypodium distachyon44.1265.0585.05214forward
CNT30117784Hordeum vulgareOryza nivara14.6422.7697.1871forward

Expression of CNT30223766

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MQLSINSRRRRTGNQRPAHRLGTLSAAPEMTVSRLLPKGSLRIRLIGMLLPK*

>peptide 2 (37 aa)
MFLLPLIIYTYGTFVLSYFSPVKFTQHIMLHRTHACS*

Sequence

>CNT30223766
AGTCAATCTGGTTCTTAACGATGATGAAAACATTTGAGAAATTACTCAAGTAGCAGTGGTCCGAAACTCCCATCAGAAATCAGAACGATGATGAAAACAT
TTGAGAAATTACTCAAGTAGCAGTGGTCCGAAACTCCCATCAGAAATCAGAACGGTCATGTTTCTTCTGCCCTTGATAATTTACACGTACGGCACATTCG
TACTCTCATACTTTTCCCCGGTAAAATTCACACAGCACATCATGCTGCATCGCACGCACGCATGCAGCTGAGCATCAACAGCCGACGGCGGCGGACGGGC
AATCAACGGCCAGCTCACAGGCTGGGCACCCTCTCGGCGGCGCCGGAGATGACGGTGAGCAGGTTGTTGCCGAAGGGGTCGCTGAGGATCAGGTTGATAG
GGATGCTGTTGCCGAAGTAGTTGAGGGTGTTGCCGTCAAGGAGCAGGGCGCCGGTCTGCAGGATGTTGTTTATGACACGGTGAGT