Detailed information on CNT30223741


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678518Hordeum vulgareSetaria viridis27.1821.585.85106forward
CNT30522256Hordeum vulgareSetaria italica27.1822.6585.85106forward
CNT30662885Hordeum vulgareTriticum dicoccoides33.3357.0297.69130forward
CNT30721484Hordeum vulgareTriticum spelta31.2816.6999.18122forward
CNT30361046Hordeum vulgareSorghum bicolor27.1817.0187.74106forward
CNT30579352Hordeum vulgareEchinochloa crusgalli27.6915.5285.19108forward

Expression of CNT30223741

Peptides detected in this lncRNA

>peptide 1 (77 aa)
MDSFIQSKLKRLMTGSKGRRDRPHGRTGGRGAGGDEDERGDELGERRLEGADLVHLPVAPHGDPADRHFRSPPSLAR*

>peptide 2 (38 aa)
MSVEMNSASAALRAPTSYTSRWLPTAILLTGIFAHLQA*

>peptide 3 (36 aa)
HIPTQLNLKLLGRTNSQVLHKQIDRVDRHRFHSTTN*

Sequence

>CNT30223741
CCATATTCCAACTCAACTGAACTTGAAATTACTCGGGCGGACGAATTCACAGGTTTTACACAAGCAAATTGACAGGGTCGATCGTCACAGGTTTCACAGC
ACCACAAACTGATGGACCGATCGACCCTGGGAATGGGATGGATTCATTCATTCAAAGCAAACTTAAACGACTCATGACTGGAAGCAAGGGGAGACGCGAT
CGACCACACGGACGGACGGGCGGGCGGGGGGCAGGCGGCGACGAAGATGAGCGTGGAGATGAACTCGGCGAGCGCCGCCTTGAGGGCGCCGACCTCGTAC
ACCTCCCGGTGGCTCCCCACGGCGATCCTGCTGACCGGCATTTTCGCTCACCTCCAAGCCTAGCTCGCTAGAGAAGAAGAAGAAGAAGGG