Detailed information on CNT30223652


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6YZY5|GL811_ORYSJ, E-value = 5e-64

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30240637Hordeum vulgareAvena sativa25.9748.0783.96187forward
CNT30469790Hordeum vulgareSaccharum spontaneum37.7825.5483.82272forward
CNT307812Hordeum vulgareZea mays38.8933.0680.36280forward

Expression of CNT30223652

Peptides detected in this lncRNA

>peptide 1 (55 aa)
MSATQKSWSGPGSEATACHEIKAKRATRRRKVGEDAIFSAPLGLVFSYIPEMFVG*

>peptide 2 (55 aa)
MSPTGKTNTSPLLSTFERNLFLLGAGRLDVTNPTYSVPSSTVRISVARGCVCGGF*

>peptide 3 (61 aa)
MRAIEMPRVLSPAICMTLIKVTLDPTLLVTLGLSRAAALKKSSALTSIGFLQTNPLTRTGA*

>peptide 4 (71 aa)
VELKVNEPHGEDKYITFVEHLREELVSVGCRQVGRDKSDIQCPLEYREDLSGTRVRVWWVLTQRSIVDACN*

Sequence

>CNT30223652
GGGTTGAACTGAAAGTGAATGAGCCCCACGGGGAAGACAAATACATCACCTTTGTTGAGCACCTTCGAGAGGAACTTGTTTCTGTTGGGTGCAGGCAGGT
TGGACGTGACAAATCCGACATACAGTGTCCCCTCGAGTACCGTGAGGATCTCAGTGGCACGAGGGTGCGTGTGTGGTGGGTTCTGACCCAAAGGAGCATA
GTCGATGCGTGCAATTGAGATGCCGAGGGTGTTGAGTCCAGCAATCTGCATGACGTTGATCAAGGTAACGTTGGACCCAACCTTGTTGGTCACCCTAGGC
TTGTCGAGGGCGGCTGCCTTGAAGAAGTCATCAGCGTTGACATCCATCGGGTTCTTGCAAACAAACCCATTGACACGCACTGGTGCATAGAGGAGATGTA
GGGTGTAAGCTTAGGTATTACTAGGAAGTGATTTTAACATACAGGTAATTTTCAGAAATTCATTTCTTGGTGATAGTACGACGGGAAAGCGGGAAGTAAG
CAGTACCTGGTGAATGCATGTCGGCAACACAAAAGTCCTGGAGCGGGCCAGGGTCGGAGGCAACAGCCTGCCATGAGATCAAGGCGAAAAGAGCAACGAG
GAGAAGGAAGGTAGGGGAGGATGCCATTTTTTCAGCTCCTTTGGGTCTTGTTTTCTCCTATATTCCTGAGATGTTTGTTGGGTGAGTGATGGTTGGAACA
TGCTGGGGATGTATGTTTTT