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Detailed information on CNT30223648


BLAST search results

BLAST vs Swiss-Prot:
sp|P93276|M030_ARATH, E-value = 6e-21

BLAST vs NONCODE:
NONCQUT002726, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671914Hordeum vulgareSetaria viridis41.1458.7594.68977forward
CNT30524649Hordeum vulgareSetaria italica72.0851.9495.331712forward
CNT30185187Hordeum vulgareSecale cereale92.1361.8695.982188forward
CNT30294268Hordeum vulgareTriticum aestivum95.7975.1395.872275forward
CNT30387090Hordeum vulgareTriticum turgidum95.7980.8596.222275forward
CNT30439575Hordeum vulgareAegilops tauschii59.3710095.961410reverse complement
CNT30242786Hordeum vulgareAvena sativa36.55100.2395.39868forward
CNT30670388Hordeum vulgareTriticum dicoccoides88.875.2195.692109forward
CNT30140120Hordeum vulgareLolium perenne96.1368.7495.312283forward
CNT3017956Hordeum vulgareZea mays79.2853.3993.891883forward
CNT30688989Hordeum vulgareTriticum urartu53.2264.2696.441264forward
CNT30721631Hordeum vulgareTriticum spelta89.5261.2295.952126forward
CNT30364089Hordeum vulgareSorghum bicolor15.7182.1689.28373forward
CNT30108930Hordeum vulgareOryza longistaminata73.1874.2795.171738forward
CNT30499372Hordeum vulgareDigitaria exilis78.2754.6995.051859forward
CNT30603680Hordeum vulgareOryza punctata85.6851.5695.232035forward

Expression of CNT30223648

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MGRYESVIHGSPVGEPYPSSVASLRSLDFPNVAN*

>peptide 2 (45 aa)
MSNEKSCEKYNRLPVEGFLHSINLRRVNRSIRNRRKGCRPMGTRK*

>peptide 3 (84 aa)
MSAKAVALPYTRIRFLAGTDTDFSLKAKKKKWVNTRPSGRTCRLRLRAPADTFRSTFTCVPKSSCRTPSFLISVLAFFIFRRGL*

>peptide 4 (33 aa)
MISMARCRGINGLGWLPFRFTNPRETLNTGCHP*

>peptide 5 (48 aa)
MTDSVQVPRGKGEKNPNRECNREPEIRCEQSVEGAERGRTHSNGVPFA*

>peptide 6 (60 aa)
RASCSICCLLLFCLGKVRISYLIQGKEERWKVLPCQIEIVWVSDNVRRYRKSCIGWMPGH*

Sequence

>CNT30223648
CGCGCTAGTTGCTCAATCTGTTGCTTGCTTCTCTTCTGTCTTGGAAAAGTGAGGATTTCCTATCTGATCCAAGGGAAGGAAGAGAGGTGGAAAGTGTTGC
CGTGTCAAATCGAGATTGTGTGGGTGTCCGATAATGTTCGACGCTATCGAAAATCATGCATTGGATGGATGCCCGGGCATTGAGAACGAAGGACGCTTTC
AGAGGTGAAAGGCCATGGGGAGATATGAATCTGTGATCCATGGATCTCCGGTCGGGGAACCGTATCCAAGCTCCGTGGCTAGTCTGCGCTCTTTGGACTT
TCCAAACGTAGCGAACTGAAACATCTGAGTAGCTAAACGAAGGAAAATCAACCGAGACCGCCTTAGTAGCGGCGAGCGAGAGCGGAACAAGGGTTTTCAT
CGAAAGAAATCCGAAGCGGTTTCATTCGATTTGTTGTGGATTGGATGATGGAAAAACCAGCAAGCAGCAAGCGTAGTTCGAAAAGTTAACGTAGCGCGCC
CTACGGACTTGTACAAAGTCAGCAACCGTTTTCGGGCGCAACCATAGGCAATACAGGACTGATGACGGGGTGGGGCACGCAGTGAACTGGTTTACTAAAA
AGATTGGAAGATCCGGCCAAAGAAGGTGATAGCACGGTTCATTCGTTCCCATGGTTCGATCCTTTCGAGTAAAACGCGGCATGTTCGAATGATGATCACT
TTTACACGAGAAAGGGGGACCACCCTCTAAGCCTAAGTATTCCTCAATGACCGATAGCGTACAAGTACCGCGAGGGAAAGGTGAAAAGAACCCCAATCGG
GAGTGCAATAGAGAACCGGAGATCCGATGCGAACAATCAGTCGAAGGAGCGGAGCGCGGGCGCACTCACTCTAACGGCGTACCTTTCGCATGATGGGTCA
GCGAGGAAATGGGAACAGCGGCTTAAGCCATTAGGTGTAGGCGCTTTCGAGAGGTGGAAGATTTACGTTCTTCCTATTTGGCCCGAAACCAATCGATCTA
GCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGAGGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCCA
ACCAAGATCGGATATTCCTGGTTTTCCGCGAAATCTATTTCAGTAGAGCGTATGATCTCGATGGCCCGATGTAGAGGAATCAATGGGCTAGGGTGGCTCC
CATTTCGCTTTACCAACCCCAGGGAAACTCTGAATACAGGCTGTCATCCCTAGTACAGACAGACTGATTGGGTGCTAAGATCCAAAGTCGAGAGGGAAAC
AGCCCAGATCGTACGCTAAGATCCCTAAGCAATCACTTAGTGGAAAAGGAAGTGCTCGAGCGATGACAACCAGGAGGTGGGCTTGGAATCAGCCATCCTT
TGAAGAAATCGTAATAGCTCCATAGTCTAGCTCCATGGCGCCGAAAATGTCGTAGGGCTCAAGTGATTCACCGAGGCGACGAGACCTTGAAAGCAGCTTT
TTCAAGTGTCAGTAGCGGGACGTTCTGTCAATCGGGGAAGGTTTTTGGTGACAAGACCTGGAGATATCAGAAGTGAGAATGCTGACATGAGTAACGAGAA
ATCCTGTGAAAAATACAATCGCCTGCCAGTGGAAGGCTTTCTGCATTCAATCAATCTACGCAGAGTGAATCGGTCCATAAGGAACCGCCGAAAGGGCTGC
CGCCCGATGGGTACACGAAAGTGACGAAGTTTCTTTGACTACTGAAGCATGCCTGGATCGTCGGAGCGAATTGGATGATCGGGCTGAGGGCTGCCCCCTC
TTCCCCTCGCTCTCCTTTCCTTAATATTCACCGTCGAGTCATCAAAGCAGTCAACTAATTCAGAGGGGCTCGGCTGGCCTGGTCACCCTACGCTACTGGC
GCTTCCAAAGGCGACGCTCTCGTCTTTAGCGACCAGCAAACGGAGGGCTAAAACGTGTAGTTTTGAAGCGAGGGATGAGCGCGAAAGCCGTTGCGCTTCC
GTACACGCGCATACGTTTTCTTGCTGGGACGGACACGGATTTCTCTCTAAAGGCGAAGAAAAAGAAGTGGGTGAACACTCGTCCCAGCGGGCGAACATGC
CGGCTCCGGCTCCGCGCACCTGCTGACACCTTTCGAAGCACTTTCACGTGTGTACCCAAGTCGTCTTGCCGAACTCCTTCCTTTCTCATTTCAGTCCTCG
CCTTTTTCATCTTCCGTAGGGGCCTTTAGTCTTTTGATTAGAGTAGAGGTCGCGAGAGAGTAGAGCGTACCGCCAATCAAACAACGCTTTTGCGCTTCCT
TCAGGATTTGGCCCGAACTGTTCGGCAGATTCCCACGCGTTACGCACCCGTTCGCCACTTTGTTCTCAACTGTTC