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Detailed information on CNT30223601


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30468477Hordeum vulgareSaccharum spontaneum14.197.7898.18220reverse complement
CNT30362312Hordeum vulgareSorghum bicolor10.3251.691.3161forward

Expression of CNT30223601

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MGFLLGIEGLDLNPHDLESRRIFLLLEISLWSVTLVN*

>peptide 2 (32 aa)
LIIGITCLYYNMFICMNGIRSKEVSSDPFVKE*

>peptide 3 (62 aa)
MFLFRLYGVAYTRYANRTYGYFTLFSHGLLNLSFFFLDHNQIKTSRVIGIHSQIQSLVIQVR*

Sequence

>CNT30223601
ACTTAATAATAGGGATTACTTGCCTATACTATAATATGTTCATTTGTATGAATGGGATAAGATCCAAAGAAGTCAGTTCGGATCCGTTTGTGAAAGAGTA
GACTAAGAAAGATAGTGAATCTTGTTTGAACCATTAATGAAAAATAGAGGTTGGTACAATAGTTAGGAAGTAAAATGGGCTTTTTATTGGGGATAGAGGG
ACTTGACTTGAACCCTCACGATTTAGAAAGTCGACGGATTTTCCTCTTACTAGAAATTTCATTGTGGTCTGTAACGTTGGTGAATTAACAGAAACGGAAA
GAGAGGGATTCGAACCCTCGGTAAACAAAAGCCTACATAGCAGTTCCAATGCTACGCCTTGAACCACTCGGCCATCTCTCCTACATAATCTTATTATTGA
CCAGAAACTGAGTGAATAGCGAGTTTTCGTATCACTAAAGTACAGGTACAACCGATCACAGGTTCCATAGGGAGTTTGACTTCCTTTCCAATTTCACATT
TCTCAACAACAACTTCTCTCATCCCCACGGATCTATTAAAAATTCTGGAATCGTCCCATGTTTCTATTTCGATTGTATGGCGTGGCGTATACACGTTATG
CAAACAGAACGTATGGTTACTTTACTCTATTTTCTCATGGCTTGTTAAACCTTTCTTTTTTCTTTTTGGATCATAACCAAATAAAAACTTCTCGAGTTAT
CGGAATCCATAGTCAAATTCAGTCCTTGGTTATTCAAGTTAGATGAAATAGTAATAGTTTGGCTCACATTGGTATACTACGAAATCCAATCTGATTCAAA
TATTGAATATCTCTCCTTGTCGGGACAATTTGAGCAGAATAAAATATCTATTATCGATTTTTTAGAATCGAATTAGTCTGTTTTTTTGCTATTTCGTACT
GTATAATTCCTTTGATTATGGGATCATTTTCCCCGAGGGTTTCCAATCAATGGGGGCGTAGTATAGGTAGTTAGAGAGTGTAGGCTCCCCTAGCTTGAAT
TCTTTTTACCCATTCTTTGAGAGTGATAGGTTTGATTTTTCCGTACCGTAATAGAAGAGCTCAGAAGAAAGACCTAATTATATAAAAACACGACCATTCA
AGCTAAAGATCAGAGGATCCGTAATAGGACTCTCATAGACTTGCCGGGAAATAGAAAATTTGGAATCGGCTTTTCTTTTGCGCTAAAAAAACTTGAGGCC
TTTTCCCTTATTATATGGCATATCCATACTTTAATAACCTAGTGCCTGATCGATTGAAAGCAATATTTACTGTCATATAGAGAGATGCTGATAGGAAAAA
GGATGGTATTTACTTATTCTCAAGAATATATAGAAAGGGAAAAGCTTAATAGCCACTATTGATCCCCTGAACAGAGCACATGATTCGGGATCAGGTGCGA
TGTGAAGAGGTAGCCTAGCCTTTTATGAGAGTCAATTGGGAAGTGGAAAGGCAAAACCATTAGTTTAAGTTCCCGGCTTTAGTCCTCTGTGAAGTTCAGT
CAACCATTTGAGTCAATTTTGAGTAAATAGTAAGACTTCGGATCGCACCATTCATAATGT