Detailed information on CNT30223517


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3020893Hordeum vulgareCitrullus lanatus99.1220.3593.51339forward
CNT30175657Hordeum vulgareVigna angularis42.9830.8891.16147forward
CNT30336644Hordeum vulgareCynara cardunculus78.0717.7488.76267forward

Expression of CNT30223517

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MVVFVVPAKRRSFAWRMKWINLFLARAKHFFSLVELSK

>peptide 2 (40 aa)
ISIIISIPFINLPILPRSMNFSINSITLSLPMRFLHLILN*

Sequence

>CNT30223517
TGATCTCTATCATCATCTCTATTCCCTTTATCAATTTGCCTATCCTACCTAGGTCTATGAATTTCTCTATCAATTCCATTACCTTATCCTTACCCATGAG
GTTCCTACATTTGATCCTAAATTGAGCTAGGATTTGTTCCCGGGCATACTCAAAAAAAGGGTTATTATACACCCCAACCCCATCCCTTGGAAAAAAGAAG
GTAGCACCGAAGAAAGGAAAGAGCGATATGGTGGTTTTTGTTGTTCCCGCGAAGCGAAGATCATTCGCTTGGCGAATGAAGTGGATCAACCTCTTTTTGG
CTCGGGCCAAACACTTTTTCTCGCTGGTAGAGCTTTCTAAAA