Detailed information on CNT30223508


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30281672Hordeum vulgareChenopodium quinoa20.5751.990.24123forward
CNT30234846Hordeum vulgareBrassica oleracea8.5321.2594.1251reverse complement
CNT30553994Hordeum vulgareOryza glaberrima59.5350.0799.44356reverse complement
CNT30229065Hordeum vulgareAnanas comosus18.2329.7898.17109reverse complement
CNT30627892Hordeum vulgareDaucus carota44.6543.8489.51267reverse complement
CNT30153321Hordeum vulgarePrunus persica61.3775.6791.01367forward
CNT3025558Hordeum vulgarePopulus trichocarpa62.2145.9391.94372reverse complement
CNT30150988Hordeum vulgareBrachypodium distachyon60.8720.8598.63364reverse complement
CNT30577653Hordeum vulgareOryza barthii29.4329.0498.3176forward

Expression of CNT30223508

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MDSVLYIREEGNQKREKTSSSFFYHLGAVRDESLMHGFA*

>peptide 2 (48 aa)
MIISWLLGTNQIRWFYFSTFLTCSYGTKVERIEKVSHSQPLMKDSSKS*

>peptide 3 (33 aa)
LPPGRSKNTTPTTQLKPIVSHFKDGPSVPLKCL*

Sequence

>CNT30223508
CCTCCCGCCTGGCAGGTCTAAGAATACAACCCCTACGACACAGTTGAAACCAATTGTCTCTCACTTCAAAGATGGACCCTCTGTTCCTTTGAAATGCCTT
TGATACATCAATTCTGCACGGTAACTCAGTAAAAGCCACCGTTTCCAGTGCTTTTTTGAGCAAGGAAATATTGGTTTTATTCGGAAAAGTTGCTTGGTGC
AAAGCTAGGGGAAACATAAAGTTTCCGCTCACCCTAAGATGATCATCTCATGGCTATTGGGAACGAATCAAATCAGATGGTTCTATTTCTCAACCTTTCT
GACTTGCTCCTACGGAACCAAGGTCGAAAGGATTGAAAAAGTCAGTCATTCACAACCACTGATGAAGGATTCCTCGAAAAGTTAAGGATTAGTAGTTCTT
TTTCGAAATCGATTTCGAAAAAGAATGGATTCGGTCTTATACATACGCGAGGAAGGTAATCAAAAAAGAGAGAAGACGAGTTCTTCTTTCTTTTATCACT
TAGGAGCCGTGCGAGATGAAAGTCTCATGCACGGTTTTGCATGAGAGAAAGAAGCGAGGAATCCTCTTTTCGACTCTGACTCCCCCACTCCAGTCGTC