Detailed information on CNT30223439


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30524487Hordeum vulgareSetaria italica22.787.1290.5395forward
CNT3075755Hordeum vulgareBrassica juncea24.2214.8382.18101forward

Expression of CNT30223439

Peptides detected in this lncRNA

>peptide 1 (40 aa)
VPANRWINMLQEKLPCSKRALEIVHILTYLGWQTKATTTL*

>peptide 2 (33 aa)
MLSVHLFHQSWSRPVTTTTHWLAKVPSSCSRRY*

>peptide 3 (29 aa)
FQQTDGSICSKKNYRVPNGRLRLFIYLLT*

Sequence

>CNT30223439
GGTTCCAGCAAACAGATGGATCAATATGCTCCAAGAAAAATTACCGTGTTCCAAACGGGCGCTTGAGATTGTTCATATACTTACTTACTTAGGGTGGCAA
ACAAAGGCAACAACAACGCTCTAGAGAAGAAAAAAAACATGCGAATACAGCAGTAAAACCATTCCAAAGTTTTTTTACTTAGGGTGGTAAAACACAGTAT
ATGCTCTCCGTCCATCTCTTCCATCAGAGCTGGTCTCGACCTGTAACAACGACGACACACTGGCTGGCTAAGGTGCCCTCAAGCTGCTCAAGGCGCTACT
AGCACTCTCCCTCCGTAGCTTGAGGGTGTAGCTGGCTACTTCCTCAGGGGTGGCCCTGTCCTTGCACTCGGCACCAGGGGTCACCATGCTTGGCTTCAGG
AGGATGCCCTCAAACAT