Detailed information on CNT30223397


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3020362Hordeum vulgareCitrullus lanatus21.112.490.7976forward
CNT3058255Hordeum vulgareAmborella trichopoda21.671.4289.7478forward

Expression of CNT30223397

Peptides detected in this lncRNA

>peptide 1 (39 aa)
HCPRFPTAAPHGSPGRVSVPVWLIIRKDQLTSLAWSAFT*

>peptide 2 (93 aa)
PLSKIPHCCPPWESGPCLSPSVADHPKRPANIIGLVSLYLTNYLILRRLIKQRLLSSGFGPNYSADSHALRTRSPLCSQLFLFQQTEAVRSKP*

Sequence

>CNT30223397
CCATTGTCCAAGATTCCCCACTGCTGCCCCCCATGGGAGTCCGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAAAAGACCAGCTAACATCATTG
GCTTGGTCAGCCTTTACCTGACCAACTACCTAATACTACGCAGGCTCATCAAACAGCGCTTGCTTTCTTCAGGATTTGGCCCGAACTATTCGGCAGATTC
CCACGCGTTACGCACCCGTTCGCCACTTTGTTCTCAACTATTCCTATTCCAGCAAACGGAGGCCGTTAGGTCAAAGCCGTAGCGCGCGCCCTATAGTTTT
GAAGCAGGGCGAGACAACTTTAGCTAGGAGCCTCTTTTCCTTCTGCCCAGCTCCCCGAAA