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Detailed information on CNT30223386

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30403755	Hordeum vulgare	Beta vulgaris	13.42	20.92	91.24	137	reverse complement
CNT30592666	Hordeum vulgare	Musa acuminata	33.5	35.15	87.43	342	forward
CNT30171414	Hordeum vulgare	Trifolium pratense	9.7	28.45	86.87	99	reverse complement
CNT30439298	Hordeum vulgare	Aegilops tauschii	89.72	95.12	98.8	916	forward
CNT30655399	Hordeum vulgare	Rosa chinensis	65.43	83.19	89.07	668	reverse complement
CNT30207123	Hordeum vulgare	Helianthus annuus	7.93	31.64	96.3	81	reverse complement
CNT30683092	Hordeum vulgare	Triticum urartu	56.32	26.01	99.65	575	forward
CNT30723089	Hordeum vulgare	Triticum spelta	30.75	100	99.36	314	forward
CNT30418333	Hordeum vulgare	Papaver somniferum	51.52	67.78	89.73	526	forward
CNT30104537	Hordeum vulgare	Oryza rufipogon	11.85	39.67	99.17	121	reverse complement
CNT30575766	Hordeum vulgare	Oryza barthii	16.94	23.25	97.11	173	forward

Expression of CNT30223386

Peptides detected in this lncRNA

>peptide 1 (56 aa)
ITTVRLSNTESKVNYESGQSANRASSPCNDVVVNLSFVFSALRTVREGFPSHGSPT*

>peptide 2 (37 aa)
MRLKWGVCCPYWAGPFPIRPHRRGISALLLPICKAPS*

>peptide 3 (61 aa)
MQGAVLALPSQDRFHTCHVRDRPPQLCIDRKAGRQSPQPTGVVTSSMSPLDSRHAMIPQGG*

Sequence

>CNT30223386
ATCACTACGGTCAGGCTATCGAACACAGAGTCAAAAGTGAATTACGAGTCAGGCCAATCTGCGAATCGAGCGAGCTCCCCTTGCAATGATGTGGTGGTGA
ACCTCTCATTCGTCTTCAGTGCTCTCCGAACCGTGCGGGAAGGTTTCCCATCACACGGCTCACCAACTTGATCTTCTGCGGGAACCTTATGTAAGAACAG
GCCTGGCAAAAGAAGTACGGTCTCGCTTTCCTTTGCCACTCAAGTGTACGGCATCTGCCGTGCTTAGGCCCCTTCTTCCCTTCCCTAATCCAAAAATGAG
TCCACCGCCTGCCTGGCACTGTATGGGTATAGGTATGGCGTGCAGGCCAGCCTCCCTTGGATTTTAGGTGATTAACTACCAAAGCGAAGAAAAGGCTGGA
TCAAGAAAAGGGGGGTACTACGAGCCCTCTGCCCCACGCATCTAACCAGCTCGCGTGGTTCACCGGTTCCACCGACGTCACCCTTAGATAGAGTTATTCA
GTCGATACAGAGATGCGCTTAAAGTGGGGGGTGTGCTGTCCCTATTGGGCTGGGCCCTTCCCCATAAGGCCCCACCGTCGGGGCATAAGCGCCCTCTTGC
TACCCATATGCAAGGCGCCGTCTTAGCCTTGCCTTCCCAGGATCGCTTCCACACCTGTCACGTTCGTGATCGGCCTCCTCAACTGTGTATCGATCGAAAG
GCAGGGCGGCAGAGCCCCCAACCGACGGGAGTAGTTACGTCCAGTATGTCCCCCCTCGATTCCCGACATGCTATGATACCCCAGGGTGGGTAGGAGCGGG
TCGAGTCCGTATCACCGCGGAACAACTGCAGTGTCCGGATCTGATCTATCTACTCGGCAATTCATCCGGTGACTTCACGGTCGCCAAAGAAGCCCCAAGA
AGCATCAAACATTTCCGATGAGATCCATGGAGCCATTCTGAGATAGCAAGCACTAGCTCAAAGTGCGACTTCATAAAAAGCAATTAAAGATAAGATCGAA
GAAAATGAAACGCACGTGGTG