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Detailed information on CNT30223244


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30378675Hordeum vulgareArabidopsis thaliana52.7271.9591.78572forward
CNT3092581Hordeum vulgareSolanum tuberosum38.0684.6392.01413reverse complement
CNT30511946Hordeum vulgareSolanum lycopersicum24.3350.1996.21264forward
CNT30655404Hordeum vulgareRosa chinensis68.286.5594.05740reverse complement
CNT30680034Hordeum vulgareTriticum urartu64.7962.9497.01703reverse complement
CNT30725625Hordeum vulgareLupinus angustifolius48.6630.3691.67528forward

Expression of CNT30223244

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MELIVIGMAKPMNSDFQIVSGGSFFFWASCGATFSFFHSICLCMLG*

>peptide 2 (54 aa)
MLSLLRSEQNFWILFRLSAGFKQPSHFLLRSQVSKWALLATQDLGFLENPAPVS*

Sequence

>CNT30223244
CTTCCAATTCCCAATAATCGATTAGATTGCACCAAGTCTAGATATCAGTAGCTGATGTCGGTATCAATGATCAGATGTCGGTGAATCGATTCAGAGGCCT
ATTTGTAAACTAGAGAATTGCCGATAGGGGATCTGCATGATAGATCATTCATTTGACTATTATGGACCAAGGGAAGAGACCAAGGTATGGAACTAATTGT
TATTGGAATGGCTAAACCAATGAATTCGGATTTCCAAATCGTTAGCGGCGGGTCTTTCTTCTTCTGGGCGAGCTGCGGAGCTACTTTTTCTTTCTTTCAT
TCCATCTGTCTCTGTATGCTTGGGTGAATGCCATAAGCGGATTTATATGCCCCGGTTCCCAGGGTTAGGGTATTCCCTATGTTGAGCCTACTCAGATCAG
AACAAAACTTTTGGATTCTCTTTCGCCTATCGGCCGGCTTTAAACAACCTTCACATTTCCTGCTGAGATCCCAAGTCTCCAAGTGGGCCCTCTTGGCCAC
CCAAGACCTTGGCTTTTTAGAGAATCCCGCTCCTGTGTCGTAGGACTTGTAGCTCGGCAGTCCACCGGGTAGGTTTGTTTATCCTTCCTTTTTCGAGTGT
CTTCTTGGATAGTTATAGCGGCCCATAGGCGCAAGATGTACCTTGTGGAGGGCGGCGGTCCCCTGGACATAGCATAGTCCTTTCAGGCAGTGGCCGTTTA
GTCCATGGTCCGTTGGATGGTCAGTGCAAGGCCAGAAATTGGAACACATTGATTCCGCTCGTTCCTGTCCTTCACTTCAGGGCCTGTCCCTCGGTGTGGT
CAGTACTCCATACTGTCGGGCAGCAAAGCTTACACTTGTTCACTTATTATGACGGTTCACCAGGGCCTCTTTCCTCCTCCCTTTTCTGCTCACTCGTAGG
GGTCCAGACCCCCACAAAGGGGGAGGGAGTCGACTGAACATCTCAGCCATTGGCGGGAATTTCGCCCGCATCCGATCCCCAATTCTTGTTCACCCCGGAT
GATCGTGTTGGGTAAATTGTGAGCTCGTACGATCGTATCGGGTGAGCAACAGTCGCTTCGTCACAGTACTGACTTATGGGCGAAC