« Back to Hordeum vulgare search


Detailed information on CNT30223001


BLAST search results

BLAST vs Swiss-Prot:
sp|P28551|TBB3_SOYBN, E-value = 3e-56

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692476Hordeum vulgareOryza sativa46.422.5186.05129forward
CNT30674888Hordeum vulgareSetaria viridis10039.3293.53278forward
CNT30522155Hordeum vulgareSetaria italica55.7617.6390.32155forward
CNT30641074Hordeum vulgareNymphaea colorata55.7642.2386.45155forward
CNT30534291Hordeum vulgareEucalyptus grandis40.2917.5885.71112forward
CNT30516889Hordeum vulgareJuglans regia25.911.990.2872forward
CNT30377201Hordeum vulgareArabidopsis thaliana54.6826.5786.84152forward
CNT30617295Hordeum vulgareSesamum indicum26.9818.2989.3375forward
CNT30728062Hordeum vulgareCorchorus capsularis44.614.2490.32124forward
CNT30381383Hordeum vulgareManihot esculenta42.816.7788.24119forward
CNT30402401Hordeum vulgareBeta vulgaris37.418.7592.31104forward
CNT30629386Hordeum vulgareVigna unguiculata28.7831.0188.7580forward
CNT30196370Hordeum vulgarePisum sativum54.6815.9585.53152forward
CNT30486254Hordeum vulgareOlea europaea52.8838.3885.03147forward
CNT30708222Hordeum vulgareGlycine max50.7234.9984.4141forward
CNT3092760Hordeum vulgareSolanum tuberosum98.9239.7482.18275forward
CNT30291318Hordeum vulgareTriticum aestivum54.6845.6596.71152forward
CNT30390564Hordeum vulgareTriticum turgidum82.3775.3397.38229forward
CNT30562825Hordeum vulgareActinidia chinensis10050.3682.73278forward
CNT30586804Hordeum vulgareMusa acuminata53.2419.1787.16148forward
CNT30542792Hordeum vulgareBrassica napus33.4521.4389.2593forward
CNT30511260Hordeum vulgareSolanum lycopersicum36.3325.0691.09101forward
CNT30553024Hordeum vulgareOryza glaberrima55.7610.8589.68155forward
CNT30442409Hordeum vulgareAegilops tauschii54.6822.6986.84152forward
CNT30252641Hordeum vulgareAvena sativa44.9615.3890.4125forward
CNT30261872Hordeum vulgareBrassica rapa41.7313.1189.66116forward
CNT30614070Hordeum vulgareArabis alpina48.929.8488.97136forward
CNT305432Hordeum vulgareZea mays5037.8790.65139forward
CNT3041960Hordeum vulgareChlamydomonas reinhardtii46.437.8386.82129forward
CNT30608822Hordeum vulgareGossypium raimondii54.6822.6986.18152forward
CNT30203517Hordeum vulgareHelianthus annuus53.613.2685.91149forward
CNT30627268Hordeum vulgareDaucus carota50.3611.3185.71140forward
CNT30681848Hordeum vulgareTriticum urartu54.6817.1897.37152forward
CNT30720996Hordeum vulgareTriticum spelta39.5744.7297.27110forward
CNT30341625Hordeum vulgareEragrostis tef46.413.2390.7129forward
CNT30363168Hordeum vulgareSorghum bicolor41.0111.5693.86114forward
CNT30595966Hordeum vulgareOryza meridionalis55.7625.2988.39155forward
CNT30369350Hordeum vulgareOryza glumipatula56.4722.5995.54157forward
CNT30433292Hordeum vulgarePapaver somniferum39.5710.584.55110forward
CNT30570854Hordeum vulgareVitis vinifera51.4471.1485.31143forward
CNT30706519Hordeum vulgarePrunus avium54.6818.3485.53152forward
CNT3033661Hordeum vulgareTheobroma cacao51.4468.7584.62143forward
CNT3057373Hordeum vulgareAmborella trichopoda25.5413.0394.3771forward
CNT3022005Hordeum vulgarePopulus trichocarpa10036.2585.25278forward
CNT30322043Hordeum vulgareAsparagus officinalis53.617.891.28149forward
CNT30119164Hordeum vulgareCitrus clementina42.8125.5485.71119forward
CNT3036150Hordeum vulgareCucumis melo26.6221.9689.1974forward
CNT30330123Hordeum vulgareDioscorea rotundata56.4715.4287.26157forward
CNT3099978Hordeum vulgareOryza rufipogon56.4719.3892.36157forward
CNT30575061Hordeum vulgareOryza barthii56.4717.2795.54157forward
CNT30117026Hordeum vulgareOryza nivara32.3713.3995.5690forward
CNT30333708Hordeum vulgareCynara cardunculus53.618.485.23149forward
CNT3049477Hordeum vulgareCucumis sativus28.4227.8289.8779forward

Expression of CNT30223001

Peptides detected in this lncRNA

>peptide 1 (43 aa)
VNSISSMPSPVYQCKKAFLLNMAVNCSLTLRNISWMEVELPTK*

>peptide 2 (91 aa)
ELHLVHAFASVPMQESLPPEHGSELLAHPPEHLLDGGRVADEVGRVLVLDVDHLLINLLCAHLTTEHGRGGEVTAMARIGGAHHVLGIPHLL

Sequence

>CNT30223001
GTGAACTCCATCTCGTCCATGCCTTCGCCAGTGTACCAATGCAAGAAAGCCTTCCTCCTGAACATGGCAGTGAACTGCTCGCTCACCCTCCGGAACATCT
CCTGGATGGAGGTCGAGTTGCCGACGAAGTAGGACGAGTTCTTGTTCTGGACGTTGATCATCTGCTCATCAACCTCCTTTGTGCTCATCTTACCACGGAA
CATGGCAGAGGCGGTGAGGTAACGGCCATGGCGAGGATCGGCGGCGCACATCATGTTCTTGGCATCCCACATTTGCTG