Detailed information on CNT30222985


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673415Hordeum vulgareSetaria viridis8.972110042forward
CNT30190327Hordeum vulgareSecale cereale85.2686.3687.47399forward
CNT30291271Hordeum vulgareTriticum aestivum68.888.9589.13322forward
CNT30388347Hordeum vulgareTriticum turgidum61.1159.3488.11286forward
CNT30438202Hordeum vulgareAegilops tauschii71.7952.9190.18336forward
CNT30661953Hordeum vulgareTriticum dicoccoides93.3875.3490.16437forward
CNT30683064Hordeum vulgareTriticum urartu96.1595.9589.78450forward
CNT30149122Hordeum vulgareBrachypodium distachyon20.318.8187.3795forward

Expression of CNT30222985

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MYRLNHRRFYLGVYTCMAWHPLCSCRQLVFTYIQRPLIM*

>peptide 2 (63 aa)
MIDDRSSSCSRSSRSWCRTCTGRCRSHSFLRSKTSSRLLGIGVRGFDWYWLGASCVLPACWLE*

>peptide 3 (36 aa)
MHGMAPALLMQAAGVYIHTKTLDHVALHGSIWIGRS*

Sequence

>CNT30222985
GGGCCACAAGCTGGTCTATAAGTCTATAACACAAACACATGTATAGGTTAAACCACAGGAGATTTTATTTAGGGGTTTATACATGCATGGCATGGCACCC
GCTCTGCTCATGCAGGCAGCTGGTGTTTACATACATACAAAGACCCTTGATCATGTAGCGTTACATGGTAGTATATGGATAGGTCGATCATAGATATCAT
GCACGCACGGTGCATGCATGATCGACGATCGATCTAGCAGCTGCAGCAGGAGCAGCCGCAGCTGGTGCCGCACTTGCACTGGGCGCTGCCGCAGCCACAG
TTTCCTCCGCAGCAAGACATCTTCGAGGTTGCTTGGGATTGGGGTTAGAGGCTTTGATTGGTATTGGCTAGGAGCTTCCTGTGTGCTTCCTGCTTGCTGG
CTTGAGTAACAATGGCAGGCAGCGTGGGTTATTTATAGGCGAGTGAGCATCAAGGAAGGAGGAGGAGG