Detailed information on CNT30222903


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678565Hordeum vulgareSetaria viridis71.5822.2295.59204forward
CNT30535895Hordeum vulgareEucalyptus grandis45.2623.2986.05129forward
CNT30282912Hordeum vulgareChenopodium quinoa50.5313.4390.28144forward
CNT30632292Hordeum vulgareVigna unguiculata24.562.339070forward
CNT30179912Hordeum vulgareSecale cereale71.5811.9698.53204forward
CNT30301056Hordeum vulgareTriticum aestivum71.5815.3898.53204forward
CNT30554216Hordeum vulgareOryza glaberrima46.6720.496.99133forward
CNT30145240Hordeum vulgareMedicago truncatula24.5612.5992.8670forward
CNT30668721Hordeum vulgareTriticum dicoccoides70.5355.8397.51201forward
CNT30598585Hordeum vulgareFraxinus excelsior50.881787.59145forward
CNT3017974Hordeum vulgareZea mays71.587.5395.1204forward
CNT30205079Hordeum vulgareHelianthus annuus45.9618.1290.84131forward
CNT30689283Hordeum vulgareTriticum urartu71.588.0498.53204forward
CNT30621081Hordeum vulgareCajanus cajan24.566.792.8670forward
CNT30409854Hordeum vulgarePapaver somniferum49.4721.2788.65141forward

Expression of CNT30222903

Peptides detected in this lncRNA

>peptide 1 (30 aa)
SSRYSPQSFPFGQTALVNRIGWAGQKKSKH*

>peptide 2 (34 aa)
AQGILPNLSLSVRQHWSIGSGGLGKKNQNTNHYS*

Sequence

>CNT30222903
AGCTCAAGGTATTCTCCCCAATCTTTCCCTTTCGGTCAGACAGCACTGGTCAATAGGATCGGGTGGGCTGGGCAAAAAAAATCAAAACACTAACCACTAC
AGTTAGATTTATTAGATTTGTTGCTAAAATATCGGTATTAAGCCCGAAACTGCCAGCGGATGGCGAGTGAGCTAAAAAAACGAAAGAATGGGTTACATTT
TTCATATGCTCTCCTCTTATAGATAGGACGAACAAAGAACAAAGTTTTTTGATCACTTACTTCGCTCGCCCTTTTTTGATCGGTT