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Detailed information on CNT3022287


BLAST search results

BLAST vs Swiss-Prot:
sp|P33628|TBA_PICAB, E-value = 7e-31

BLAST vs NONCODE:
NONPOPT001745, E-value = 4e-25

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30380834Populus trichocarpaManihot esculenta85.6482.6388.07352forward
CNT30488155Populus trichocarpaOlea europaea22.6322.7990.3293forward
CNT30388443Populus trichocarpaTriticum turgidum47.265.3281.96194forward
CNT30213619Populus trichocarpaHelianthus annuus18.7324.2988.3177forward
CNT30721065Populus trichocarpaTriticum spelta53.5398.2181.82220forward
CNT30364150Populus trichocarpaSorghum bicolor77.6283.5182.76319forward
CNT30621647Populus trichocarpaCajanus cajan16.5529.4488.2468forward
CNT30426941Populus trichocarpaPapaver somniferum36.7426.2284.77151forward
CNT3034106Populus trichocarpaTheobroma cacao42.0984.886.13173forward

Expression of CNT3022287

Peptides detected in this lncRNA

>peptide 1 (76 aa)
LKTVTILRLLPHNIKNRINQLRTLSIMTLGPVISSARLSKHKVIRPKDLAIGTSPHTVHSTRLKIHKHSARDKSSA*

>peptide 2 (32 aa)
MLSANNLPELGTDLVAALSSLNVKDFSHFLCYI

>peptide 3 (46 aa)
LEDSHNSPPPSSQHQEPNQSTPHPQYNDPWPSYFQRQTVQTQSYQA*

Sequence

>CNT3022287
CTTGAAGACAGTCACAATTCTCCGCCTCCTTCCTCACAACATCAAGAACCGAATCAATCAACTCCGCACCCTCAGTATAATGACCCTTGGCCCAGTTATT
TCCAGCGCCAGACTGTCCAAACACAAAGTTATCAGGCCTAAAGATCTGGCCATAGGGACCAGTCCTCACACTGTCCATAGTACCAGGCTCAAGATCCATA
AGCACAGCGCGAGGGACAAATCGTCCGCATGAGGCCTCATTGTAATAAACATTGACGCGCTCCAATTGAAGGTCAGAGGATCCAGTGTATTTTCCAGTAG
GATCAATTCCATGCTCAGCGCAAACAACCTCCCAGAACTTGGAACCGATTTGGTTGCCGCACTGTCCTCCTTGAATGTGAAGGATTTCTCTCATTTTTTA
TGTTATATTTC