CANTATAdb - search

Detailed information on CNT30222858

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30190430	Hordeum vulgare	Secale cereale	100.99	90.94	88.87	512	forward
CNT30293970	Hordeum vulgare	Triticum aestivum	71.6	56.28	92.29	363	forward
CNT30390514	Hordeum vulgare	Triticum turgidum	101.78	94.51	90.5	516	forward
CNT30438687	Hordeum vulgare	Aegilops tauschii	67.85	100.29	91.86	344	forward

Expression of CNT30222858

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MHGACMIDDRSSSCSRSSRSWCRSCTGRCRSRSFLRSKTSSVRLELRR*

Sequence

>CNT30222858
TTTCTAGTTTCTCAGCCCTTTCAGCTCTTAAGCAGTGTTTTTTGCCTCATGAAGAAGAGGAAAAAGAAAGTGATGATATAACATAACACAAACACATGTA
TAGTTAAACCAGGGAGATTTTATTTAGGGGGGCGTTTTACAAGGATGGCATGGCACCTGCTCTGATGCAGGTCAGGTGCGTACATAAAGGCCCTCGATCA
GGTTGCGGTTACATGGTATGATAGTAGTAGATCGATACGATACGATGATGCATGCACGGTGCATGCATGATCGACGATCGATCTAGCAGCTGCAGCAGGA
GCAGCCGCAGCTGGTGCCGCAGTTGCACTGGGCGCTGCCGCAGCCGCAGTTTCCTCCGCAGCAAGACATCCTCGGTTCGGTTGGAGCTTCGGAGATGAAG
AGGCTTTGAATGGCTATGAGCTTCTTGTGTGCTTCTTGCTGGCTTGAGGAATAATGGAAGGGCAGCGAGGCCTATTTATAGGCAGTCAGAAGGAGAAGAA
GAGATGC