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Detailed information on CNT30222663


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672379Hordeum vulgareSetaria viridis50.9957.4687.98258forward
CNT30521103Hordeum vulgareSetaria italica53.7546.583.82272forward
CNT30182270Hordeum vulgareSecale cereale54.3549.8289.45275forward
CNT30294278Hordeum vulgareTriticum aestivum53.9563.3489.01273forward
CNT30390478Hordeum vulgareTriticum turgidum52.9622.4887.69268forward
CNT30249726Hordeum vulgareAvena sativa30.4319.294.16154forward
CNT30454500Hordeum vulgareSaccharum spontaneum27.4738.489.93139forward
CNT30135064Hordeum vulgareLolium perenne30.6327.1592.9155forward
CNT304588Hordeum vulgareZea mays51.5820.2386.21261forward
CNT30720963Hordeum vulgareTriticum spelta39.5335.9191200forward
CNT30344815Hordeum vulgareEragrostis tef44.8652.7988.99227forward
CNT30104607Hordeum vulgareOryza rufipogon19.1727.0291.7597forward
CNT30578384Hordeum vulgareOryza barthii25.6933.1689.23130forward
CNT30557050Hordeum vulgarePanicum hallii29.8439.7490.07151forward
CNT30551896Hordeum vulgareOryza brachyantha29.6422.6291.33150forward
CNT30112090Hordeum vulgareFicus carica24.115.9683.61122forward
CNT3040359Hordeum vulgareMarchantia polymorpha25.4917.2281.4129forward

Expression of CNT30222663

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MGEADLDAAEERADGGAVGGEVGEVPRDEGA

>peptide 2 (78 aa)
MIWRHRTCMPPINLLEEVWEVEHVEEEVCPDGAGYTAEEEASGELRPPFGGLELVGLLLASGEGSHGRGRPRCRGGAG*

Sequence

>CNT30222663
TGTTTGTAGAGTTTCTCCGTGGTGTGTGTTCTTGAGAGAAGAAGAGAGTGTTGCTAGGAGGTAGAAGAAGGCGGCGCAGCGACGAGACGGCGCCGACAAC
CACCACCACGAGTCCATTGAGCGACGAAATAAGCTAGTCCCAAAGATTATGAGGAATATGTAAAAATTCATTTATACATAGAAGACTCGTTCAGGCAACC
ACCGAGAAGAGATGGCATGATCTGGAGACATCGTACATGCATGCCACCTATTAATCTACTTGAAGAAGTATGGGAGGTCGAGCACGTAGAGGAGGAAGTA
TGCCCAGACGGCGCCGGATACACCGCCGAAGAAGAAGCCTCCGGTGAACTGCGACCACCCTTCGGCGGTCTGGAGCTTGTCGGCCTCCTTCTTGCGTCCG
GTGAGGGTAGCCATGGGCGAGGCCGACCTCGATGCCGCGGAGGAGCGGGCTGACGGCGGTGCGGTAGGCGGGGAGGTTGGAGAGGTACCACGCGACGAGG
GGGCTG