Detailed information on CNT30222634


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690660Hordeum vulgareOryza sativa22.789.0994.4472forward
CNT30674846Hordeum vulgareSetaria viridis21.8413.4892.7569forward
CNT30522866Hordeum vulgareSetaria italica45.2535.2291.61143forward
CNT30456759Hordeum vulgareSaccharum spontaneum37.032593.16117forward
CNT306195Hordeum vulgareZea mays31.0125.9394.998forward
CNT30596071Hordeum vulgareOryza meridionalis23.7319.7490.6775forward
CNT30101341Hordeum vulgareOryza rufipogon29.1120.7788.0492forward
CNT30576149Hordeum vulgareOryza barthii29.1118.7888.0492forward
CNT30604008Hordeum vulgareOryza punctata29.1126.986.9692forward

Expression of CNT30222634

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MNLPKTTLKSTSGSISLMGTPVSMLSCASAPLPVMISPMMEKA

Sequence

>CNT30222634
ATGCATGGCGAATTAGCTGCTAGCTCTTGTTTTTCATAAGGCAACGACCAACTTCTTCTTACACCTAAGTACACCCCAAGGTCTCACGAACACAACAAAC
AGGCAAAGCACGTACGTACGTACAATTAATGGCCAAAAAGCATTCGCACGTGCCGGTGCCGATCTAGTCGTCGTCCTCGCCGCTGATGAACTTGCCGAAG
ACGACGTTGAAGAGCACGAGCGGCTCGATCTCGCTGATGGGCACCCCGGTCTCGATGTTGAGCTGCGCCAGCGCGCCCTTGCCCGTGATGATCTCCCCGA
TGATGGAGAAGGCGAT