Detailed information on CNT30222607


BLAST search results

BLAST vs Swiss-Prot:
sp|P25307|BLT4_HORVU, E-value = 4e-18

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30182855Hordeum vulgareSecale cereale48.0121.1687.26157forward
CNT30390769Hordeum vulgareTriticum turgidum36.0915.8885.59118forward
CNT30444118Hordeum vulgareAegilops tauschii28.7521.5188.394forward
CNT30473478Hordeum vulgareSaccharum spontaneum15.624.1790.251forward
CNT30140014Hordeum vulgareLolium perenne22.0214.1786.1172forward
CNT30688858Hordeum vulgareTriticum urartu37.6117.488.62123forward
CNT30104032Hordeum vulgareOryza rufipogon15.620.8288.2451forward

Expression of CNT30222607

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MAASAATRSIAATRATSASLVAAVRAISTD*

>peptide 2 (56 aa)
GTLTPHLEGMPAALPALYAPATLLRHLHVACLSAGWCRCLLRRRRRGPRQSSPGRR*

>peptide 3 (41 aa)
DADAAPGGDACGPAGVVRAGDTLEAPARSLLVGGLVPLPFA*

Sequence

>CNT30222607
GGGACGCTGACGCCGCACCTGGAGGGGATGCCTGCGGCCCTGCCGGCGTTGTACGCGCCGGCGACACTCTTGAGGCACCTGCACGTAGCTTGCTTGTCGG
CGGGCTGGTGCCGCTGCCTTTTGCGTAGGCGGCGCAGGGGCCCAAGGCAGAGCTCACCTGGCCGCAGGTGATGGCCGCGTCGGCGGCTACGAGGAGCATT
GCCGCCACCAGGGCGACCAGCGCGAGCTTGGTTGCTGCAGTGCGAGCCATCTCGACGGACTAAGGTGCAGTTGTGGTGGTGGGCTCACGGGGAGAGGGTG
GCAATGAGATAGCTAGATTTGCTTCTG