CANTATAdb - search

Detailed information on CNT30222305

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30185403	Hordeum vulgare	Secale cereale	6.89	35.66	100	92	reverse complement
CNT30227586	Hordeum vulgare	Ananas comosus	5.62	20.78	89.33	75	forward
CNT30721105	Hordeum vulgare	Triticum spelta	11.24	71.09	98.67	150	forward
CNT30434598	Hordeum vulgare	Papaver somniferum	12.36	46.48	85.45	165	forward
CNT30149255	Hordeum vulgare	Brachypodium distachyon	13.33	59.33	97.75	178	forward
CNT30576783	Hordeum vulgare	Oryza barthii	17.38	38.67	88.36	232	forward

Expression of CNT30222305

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MHLDESLAFFWQKLDCFQQTSNLWRWLICPTLIDSDIATLISMRHIDTIIPIFYRPC*

>peptide 2 (50 aa)
MEYIRLDHQIISSFHTGPDRAHSYYEKGSFEPMEIGYSVYIEIPTSLHSI*

>peptide 3 (46 aa)
AHSCASTAVLSPSFAHPGVRGKGYLLKESLVSADTRIGRAYYHIEM*

>peptide 4 (34 aa)
MHLFGLLLNREIGLYIFHLFDCDIDFDTYKVSYG*

Sequence

>CNT30222305
TGCTCACTCTTGCGCTTCAACGGCAGTATTGTCTCCATCTTTCGCCCACCCAGGGGTTAGGGGTAAGGGTTATCTTTTGAAAGAATCTCTTGTATCAGCA
GATACGAGAATCGGTCGTGCATATTATCATATAGAAATGTGAATCGAGATGCATCTGGATGAGAGTTTGGCTTTCTTTTGGCAAAAGCTGGATTGTTTTC
AGCAAACTAGCAATCTGTGGAGATGGCTGATCTGTCCCACCTTGATTGATAGCGATATAGCCACTCTCATTTCAATGCGGCACATTGATACCATCATTCC
AATCTTCTATCGTCCGTGCTAAATACCATGAAATTAAGTAGCTAAGGTCTAGTGGACCTATTTAAACAAGGATATGCTGATCCTTCTCTGTCGACTTTTC
CACTATCAACCCCCAAAACCCAACTCTGCCTTACGTAAAGGAAATTAGTACGATTCACTTCTAGATTTGAAATCACTGCATTGGTGTGGATTCGCTGGCT
CTGTTTGAAGCTTCGAACCTGTATTGAGCTTTCTTCCTTCGTATCGTATTTCAGCGGATCGGGTAGTTCCGGTTGCAGTCCCAGGGCTTTCAATTACTAC
TACTTACGAGGTTTTTCGTTCTATTGAAAACCTGCGACCATTCTGAGCCATTTACGAACATTACAGCGAATATGATCAAGACATTTATGGCTCCCACATA
AATAAGAAGTTGTGCGACAGCTACAAAGTAGGAATTTAATAAAAAATAGAATAAGGATATACAAACAAGAACTAATCCCAGCGAAAAGGCAGAATAAATG
GGGTTGGTAAGTAGAATGAGCATTCTCCATATTATGCCTTGAAGAGGACTCGAACCTCCACGCTCTTCAGCACGAGATTTTGAGTCTCGCGTGTCTACCA
TTTCACCATCAAGGCATCTTGAAAGTGAATTGTATTCCATGAATATGATATCTATCTAATGTGATATATGGAATATATTCGACTCGATCATCAGATTATA
AGTTCATTCCATACCGGACCAGACCGTGCACATTCTTATTATGAGAAGGGGTCATTCGAGCCTATGGAAATAGGATACTCTGTTTACATAGAAATCCCTA
CGTCCTTACATTCTATTTAGGATTAGGAATAGGTGTAATCAGACCTGCTTTTGACATATCTATCCTATTCTTATTTGGGTACCATATGCACCTCTTTGGG
CTTCTATTGAATCGAGAAATTGGATTGTACATCTTTCATCTTTTTGATTGTGATATCGATTTTGATACATATAAGGTGTCCTACGGATAATGCAAATCGA
AGCTATTTGATGTCTGACTCGGGCCTATATGACCG