Detailed information on CNT30222283


BLAST search results

BLAST vs Swiss-Prot:
sp|P23993|PSAL_HORVU, E-value = 2e-42

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673169Hordeum vulgareSetaria viridis31.1934.292.37131forward
CNT30520857Hordeum vulgareSetaria italica31.1913.8892.37131forward
CNT30639966Hordeum vulgareNymphaea colorata25.247.0683.02106forward
CNT30534100Hordeum vulgareEucalyptus grandis30.9517.8184.62130forward
CNT30629841Hordeum vulgareVigna unguiculata33.5724.182.98141forward
CNT30564216Hordeum vulgareActinidia chinensis31.1958.7486.26131forward
CNT3084712Hordeum vulgareVigna radiata28.5742.484.17120forward
CNT30437582Hordeum vulgareAegilops tauschii28.8136.6795.87121forward
CNT30261201Hordeum vulgareBrassica rapa30.7114.5382.17129forward
CNT30610860Hordeum vulgareGossypium raimondii1521.3687.363forward
CNT30129085Hordeum vulgareCorymbia citriodora30.9512.3584.62130forward
CNT30683149Hordeum vulgareTriticum urartu32.3830.797.79136forward
CNT30319122Hordeum vulgareAsparagus officinalis26.677.5791.07112forward
CNT30582252Hordeum vulgareEchinochloa crusgalli32.6220.7991.24137forward
CNT30604850Hordeum vulgareOryza punctata22.869.8989.5896forward
CNT30556884Hordeum vulgarePanicum hallii32.6218.8792.7137forward
CNT30551919Hordeum vulgareOryza brachyantha23.576.3592.9399forward

Expression of CNT30222283

Peptides detected in this lncRNA

>peptide 1 (97 aa)
PFGGLELVGLLLASGEGEHRRGGRLALVEGGDAEERADGGAVGGEVGEVPRDEGAGGDRRLQAADERVAVDGLDHLVRRLRGNTKTCMRCKARPTTS*

>peptide 2 (41 aa)
PSAVWSLSASFLRPVRVSTGAVDGSPSLKEATPRSGLTAVR*

>peptide 3 (28 aa)
MNKSLFVLKNNTLNLNFSSLLHAIASLRL

Sequence

>CNT30222283
CCCTTCGGCGGTCTGGAGCTTGTCGGCCTCCTTCTTGCGTCCGGTGAGGGTGAGCACCGGCGCGGTGGACGGCTCGCCCTCGTTGAAGGAGGCGACGCCG
AGGAGCGGGCTGACGGCGGTGCGGTAGGCGGGGAGGTTGGAGAGGTACCACGCGACGAGGGGGCTGGAGGTGACCGGCGTCTCCAGGCTGCCGATGAACG
GGTCGCCGTTGATGGGCTGGACCACTTGGTACGTCGGCTGAGAGGAAACACCAAAACATGTATGAGATGCAAAGCAAGGCCTACAACAAGCTAAACCCTA
CTTGTATCCCACAAATTGTGGTTTGTTTTGGATGAATAAATCTCTGTTCGTCCTAAAAAACAACACGCTAAACCTTAATTTTAGCTCTCTCTTGCATGCA
ATTGCAAGTTTGCGACTGAC