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Detailed information on CNT30222279


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8VZC0|UXS1_ARATH, E-value = 1e-60

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30318541Hordeum vulgareCorylus avellana84.7754.5883.59256forward
CNT30500451Hordeum vulgareCoffea canephora48.0113.5982.76145forward
CNT30277485Hordeum vulgareChenopodium quinoa47.3516.7681.12143forward
CNT3021362Hordeum vulgareCitrullus lanatus53.3124.7383.23161forward
CNT30727603Hordeum vulgareCorchorus capsularis51.3231.3883.23155forward
CNT30504810Hordeum vulgareNicotiana attenuata47.0221.8183.1142forward
CNT30636701Hordeum vulgareCapsicum annuum47.0234.5584.51142forward
CNT3098150Hordeum vulgareSolanum tuberosum35.4321.8484.11107forward
CNT30182233Hordeum vulgareSecale cereale10048.5597.68302forward
CNT30590847Hordeum vulgareMusa acuminata10066.0882.12302forward
CNT30510868Hordeum vulgareSolanum lycopersicum47.0268.2783.8142forward
CNT30143812Hordeum vulgareMedicago truncatula52.9812.9381.88160forward
CNT30246244Hordeum vulgareAvena sativa98.6836.6196.31298forward
CNT30457014Hordeum vulgareSaccharum spontaneum98.6839.0192.62298forward
CNT30134072Hordeum vulgareLolium perenne98.6841.0594.63298forward
CNT3066796Hordeum vulgareLeersia perrieri99.0176.8693.65299forward
CNT30338563Hordeum vulgareEragrostis tef99.6772.7191.36301forward
CNT30363710Hordeum vulgareSorghum bicolor50.3325.8987.5152forward
CNT30595456Hordeum vulgareOryza meridionalis10052.9894.04302forward
CNT30424172Hordeum vulgarePapaver somniferum47.3520.4986.01143forward
CNT3054595Hordeum vulgareAmborella trichopoda46.3667.6384.29140forward
CNT30325711Hordeum vulgareAsparagus officinalis85.180.5685.6257forward
CNT30580107Hordeum vulgareEchinochloa crusgalli98.6857.4293.96298forward
CNT30497454Hordeum vulgareDigitaria exilis99.6780.9194.02301forward
CNT30594668Hordeum vulgareEragrostis curvula10089.6193.38302forward
CNT30336663Hordeum vulgareCynara cardunculus50.6632.7686.27153forward
CNT30723923Hordeum vulgareLupinus angustifolius46.6968.7881.56141forward
CNT3064271Hordeum vulgareSelaginella moellendorffii47.352681.12143forward

Expression of CNT30222279

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MRGTRGGRSGRPREGWARRRRVGAARTWGSAGGARRSPSS

>peptide 2 (45 aa)
INMPPISLLLRMLKWVTINFTCAGQQEPCTNSLCQTQHIQGSHDI*

Sequence

>CNT30222279
GATTAACATGCCCCCAATAAGTCTCCTTCTGCGGATGCTCAAGTGGGTCACCATAAACTTCACTTGTGCTGGTCAACAAGAACCTTGCACCAATTCGCTT
TGCCAGACCCAACATATTCAAGGTTCCCATGACATTTGATATGATCGTCTTGATGGGGTTGTATTTGTAGTGCACGGGCGATGCGGGGCACGCGAGGTGG
TAGATCCGGTCGACCTCGAGAAGGATGGGCTCGACGACGTCGTGTCGGAGCAGCTCGAACCTGGGGTTCCGCAGGTGGTGCGCGACGTTCTCCTTCCTCC
CG