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Detailed information on CNT30222203

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30693417	Hordeum vulgare	Oryza sativa	39.07	99.54	96.79	218	forward
CNT30556045	Hordeum vulgare	Oryza glaberrima	32.62	5.58	90.66	182	reverse complement
CNT3017916	Hordeum vulgare	Zea mays	34.23	9.26	91.1	191	reverse complement

Expression of CNT30222203

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MGFLLGIEGLDLNPHDLESRRIFLLLEISLWSVTLVN*

>peptide 2 (31 aa)
IIGITCLYYNMFICMNVIRSKEVSSDPFVKE*

>peptide 3 (29 aa)
MLRLEPLGHLSYIILLLTRNSVNREFSYH*

Sequence

>CNT30222203
ATAATAGGGATTACTTGCCTATACTATAATATGTTCATTTGTATGAATGTGATAAGATCCAAAGAAGTCAGTTCGGATCCGTTTGTGAAAGAGTAGAATA
AGAAAGATAGTGAATCTTGTTTGAACCATTAATGAAAAATAGAGGTTGGTACAATAGTTAGGAAGTAAAATGGGCTTTTTATTGGGGATAGAGGGACTTG
ACTTGAACCCTCACGATTTAGAAAGTCGACGGATTTTCCTCTTACTAGAAATTTCATTGTGGTCGGTAACGTTGGTGAATTAACAGAAACGGAAAGAGAG
GGATTCGAACCCTCGGTAAACAAAAGCCTACATAGCAGTTCCAATGCTACGCCTTGAACCACTCGGCCATCTCTCCTACATAATCTTATTATTGACCAGA
AACTCAGTGAATAGAGAGTTTTCGTATCACTAAAGTACAGGTACAACCGATCACAGGTTCCATAGGGAGTTTGACTTCCTTTCCAATTTCATATTTCTCA
ACAACAACTTCTCTCATCCCCATGGATCTATTCAAAATTCGGGAATCGTCCCATGTTT