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Detailed information on CNT30221907


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT002454, E-value = 6e-162

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30619000Hordeum vulgareSesamum indicum78.130.794.03938forward
CNT30632407Hordeum vulgareVigna unguiculata78.634.9595.34944reverse complement
CNT30505430Hordeum vulgareNicotiana attenuata78.139.9796.48938forward
CNT30157603Hordeum vulgarePistacia vera58.5373.6990.47703forward
CNT30543268Hordeum vulgareBrassica napus97.8451.294.381175forward
CNT30147391Hordeum vulgareMedicago truncatula78.137.0895.52938reverse complement
CNT30655407Hordeum vulgareRosa chinensis100.1735.9993.851203forward
CNT30207637Hordeum vulgareHelianthus annuus78.147.9695.42938forward
CNT30628241Hordeum vulgareDaucus carota78.134.7496.27938reverse complement
CNT30360996Hordeum vulgareLactuca sativa78.164.2996.38938forward
CNT30571858Hordeum vulgareVitis vinifera78.1827.0996.38939reverse complement
CNT3057903Hordeum vulgareAmborella trichopoda95.1747.791.081143reverse complement
CNT30331546Hordeum vulgareDioscorea rotundata33.7297.1293.58405reverse complement

Expression of CNT30221907

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MTTRRWAWKQPSFEESVIAHWSSSMAPKMSQGSSDSPKRQDLESSFFKCQ*

>peptide 2 (45 aa)
MSNEKSCEKHDRLPVEGFLHSVNLRRVNRSLRNPRKGCRPMGTRK*

>peptide 3 (39 aa)
IRPKKVIAMFIRSHGSILPSKMRGVRMMISFTRERGTTL*

>peptide 4 (41 aa)
MMSMARGRALNGLGWPHFALPTPGKLRIQAVILSTDRLIGC*

Sequence

>CNT30221907
GATCCGGCCAAAGAAGGTGATAGCCATGTTCATTCGTTCCCATGGTTCGATCCTTCCCAGTAAAATGCGGGGTGTTCGAATGATGATCTCTTTTACGCGA
GAAAGGGGGACCACCCTCTAAGCCTAAGTATTCCTCAATGACCGATAGCGTACAAGTACCGTGAGGGAAAGGTGAAAAGAACCCCAATCGGGGAGTGCAA
TAGAGAACCTAAGATCCGATGCGAACAATCAGTCGAAGGAGCGGAGCGCGGGCGCACTCACTCTAACGGTGTACCTTTCGCATGATGGGTCAGCGAGGAA
ATGGGAACAACGGCTTAAGCCATTAGGTGTAGGCGCTTTCCAGAGGTGGAAGATTTACATTCTTCCTATTTGACCCGAAACCGATCGATCTAGCCATGAG
CAGGTTGAAGAGAGCTCTAACAGGCCTTGGAGGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCCAACCAAGAT
CGGATATAGCTGGTTTTTCGCGAAATCTATTTCAGTAGAGCGTATGATGTCGATGGCCCGAGGTAGAGCACTCAATGGGCTAGGGTGGCCCCATTTCGCT
TTACCAACCCCAGGGAAACTCCGAATACAAGCCGTCATCCTTAGTACAGACAGACTGATTGGGTGCTAAGATCCAAAGTCGAGAGGGAAACAGCCCAGAT
CGTACGCTAAGGTCCCTAAGCAATCACTTAGTGGAAAAGGAAGTGATCGAGCGATGACAACCAGGAGGTGGGCTTGGAAGCAGCCATCCTTTGAAGAAAG
CGTAATAGCTCACTGGTCTAGCTCCATGGCACCGAAAATGTCTCAGGGCTCAAGTGATTCACCGAAGCGACAAGACCTTGAAAGCAGCTTTTTCAAGTGT
CAGTAGCGGGACGTTCTGTCAATCGGGGAAGGTTTTTGGTGACAAGACCTGGAGATATCAGAAGTGAGAATGCTGACATGAGTAACGAGAAATCCTGTGA
AAAACACGATCGCCTGCCAGTGGAAGGCTTTCTGCATTCGGTCAATCTACGCAGAGTGAATCGGTCCCTAAGGAACCCCCGAAAGGGCTGCCGTCCGATG
GGTACACGAAAGTGACGAAGTTGCTTTGACTACTGAACCATGCCTGGATCGTCGGAGCGAATTGGATGATCGGGCCGAGGGCTGCCCCCGCGCCCCACCC
C