Detailed information on CNT30221870


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30524653Hordeum vulgareSetaria italica67.5569.8798.69837forward
CNT30504983Hordeum vulgareNicotiana attenuata30.7520.9299.21381forward
CNT30553404Hordeum vulgareOryza glaberrima27.7624.3697.97344forward
CNT30369805Hordeum vulgareOryza glumipatula43.9137.9496.14544forward
CNT30154718Hordeum vulgarePrunus persica30.0253.6895.97372forward
CNT30104484Hordeum vulgareOryza rufipogon21.5510095.51267reverse complement
CNT30576076Hordeum vulgareOryza barthii57.9515.9798.61718forward

Expression of CNT30221870

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MFSSRPGSPGSTTVRPNHSQNLSLILAQKER*

>peptide 2 (42 aa)
MMLSWSFRMISHTGTETRPGLPRGAAVGNLGQWAKARSSNIA*

>peptide 3 (38 aa)
LLAWIILLSSGEMVSVKKGHYHQRKTALKWICWSTMTK*

>peptide 4 (35 aa)
MQVERCFRGAGQKEKRLLAKVVSPCFKTTGRALRL*

>peptide 5 (34 aa)
MTGLEEEAPANSVPAAAVRRGGQVFFGMTGRKGT*

>peptide 6 (46 aa)
VVGVDYLVKLWRDGEREERTLPSKKDSSQMDLLVYDDQVEASVPHR*

Sequence

>CNT30221870
GGTTGTTGGCGTGGATTATCTTGTTAAGCTCTGGAGAGATGGTGAGCGTGAAGAAAGGACACTACCATCAAAGAAAGACAGCTCTCAAATGGATTTGCTG
GTCTACGATGACCAAGTAGAAGCATCCGTTCCACATAGGTGATTTTTATAGAAGCATAGGCGCAAGCTCTTCTCAAAAGAATTTCGTTTATAGGATTCAG
TCGTCCGTTTGTTTTGTTTTGAATTGACATAGAGAAATCTTTCTCGCGTTCCCTTAATTCAGGAATAGGTGGCGAAGGCTACTTGTTCCTTGTATATATA
TATAAAGGAAAGGGGTTATTTTTCCTTTACGGCAATAAGAGTTGATTCCCTTGCTTGTAGTTTTGGATCGATTCCGTGTATTTCACATATTTAAGAGTGG
TTAGGAGAGAGAATCAATGTTTAGTAGTAGGCCCGGTTCACCAGGTTCTACCACTGTTCGGCCCAATCATAGTCAAAATCTGAGTTTGATCCTGGCTCAG
AAGGAACGCTAGCTATATGCTTAACACATGCAAGTCGAACGTTGTTTTCGGGGAGCTGGGCAGAAGGAAAAGAGGCTCCTAGCTAAAGTTGTCTCGCCCT
GCTTCAAAACTACAGGGCGCGCGCTACGGCTTTGACCTAACGGCCTCCGTTTGCTGGAATCGGAATAGTTGAGAACAAAGTGGCGAACGGGTGCGTAACG
CGTGGGAATCTGCCGAACAGTTCGGGCCAAATCCTGAAGAAAGCTCAAAAGCGCTGTTTGATGAGCCTGCGTAGTATTAGGTAGTTGGTCAGGTAAAGGC
TGACCAAGCCAATGATGCTTAGCTGGTCTTTTCGGATGATCAGCCACACTGGGACTGAGACACGGCCCGGACTCCCACGGGGGGCAGCAGTGGGGAATCT
TGGACAATGGGCGAAAGCCCGATCCAGCAATATCGCGTGAGTGAAGAAGGGCAATGCCGCTTGTAAAGCTCTTTCGTCGAGTGCGCGATCATGACAGGAC
TCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCAAGTGTTCTTCGGAATGACTGGGCGTAAAGGCACGTAGGCGGT
GAATCGGGTTGAAAATGAAAGTCGCCAAAAAGTGGCGGAATGCTCTCGAAACCAATTCACTTGAGTGAGACAGAGGAGAGTGGAATTTCGTGTGTAGGGG
TGAAATCCGTAGATCTATGAAGGAACGCCAAAAGCGAAG