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Detailed information on CNT30221833


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000336, E-value = 5e-138

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30670969Hordeum vulgareSetaria viridis67.3380.5497.93919reverse complement
CNT30641383Hordeum vulgareNymphaea colorata67.3329.4294.99919forward
CNT30550219Hordeum vulgareIpomoea triloba67.5521.2396.96922forward
CNT30702366Hordeum vulgareQuercus lobata67.492.3796.41920reverse complement
CNT3020470Hordeum vulgareCitrullus lanatus19.6349.7296.64268reverse complement
CNT30504586Hordeum vulgareNicotiana attenuata67.5552.3696.1922forward
CNT30712072Hordeum vulgareGlycine max19.7142.4393.31269forward
CNT30637481Hordeum vulgareCapsicum annuum21.3965.1894.86292forward
CNT3094274Hordeum vulgareSolanum tuberosum15.5371.8697.17212reverse complement
CNT30569655Hordeum vulgareActinidia chinensis67.6225.9296.21923forward
CNT30543278Hordeum vulgareBrassica napus57.7329.1994.54788forward
CNT30508923Hordeum vulgareSolanum lycopersicum22.0590.1297.01301forward
CNT30554477Hordeum vulgareOryza glaberrima28.0652.9796.87383reverse complement
CNT30147396Hordeum vulgareMedicago truncatula67.5530.9996.1922forward
CNT30441199Hordeum vulgareAegilops tauschii68.7994.5697.87939forward
CNT30258490Hordeum vulgareAvena sativa26.8150.6997.54366forward
CNT30660235Hordeum vulgareTriticum dicoccoides48.3570.1497.27660reverse complement
CNT30605146Hordeum vulgareGossypium raimondii48.4243.2996.82661reverse complement
CNT30216563Hordeum vulgareKalanchoe fedtschenkoi67.5523.7197.07922forward
CNT3067934Hordeum vulgareLeersia perrieri16.4198.2594.64224reverse complement
CNT30202530Hordeum vulgareHelianthus annuus42.278.5895.83576forward
CNT30718256Hordeum vulgareMalus domestica golden18.8383.9987.94257forward
CNT30682011Hordeum vulgareTriticum urartu64.1889.8597.83876forward
CNT30595568Hordeum vulgareOryza meridionalis24.2585.3197.89331reverse complement
CNT30369921Hordeum vulgareOryza glumipatula16.6398.796.92227forward
CNT30484250Hordeum vulgareChara braunii13.8526.0392.06189reverse complement
CNT30429739Hordeum vulgarePapaver somniferum67.6228.6992.2923forward
CNT30644906Hordeum vulgareCannabis sativa14.863.1289.6202reverse complement
CNT3056076Hordeum vulgareAmborella trichopoda59.7135.491.41815forward
CNT30320583Hordeum vulgareAsparagus officinalis19.5624.3498.88267forward
CNT30118993Hordeum vulgareCitrus clementina2077.5692.67273forward
CNT3038324Hordeum vulgareCucumis melo67.6248.9495.77923reverse complement
CNT30103741Hordeum vulgareOryza rufipogon21.8356.6595.3298reverse complement
CNT30557400Hordeum vulgarePanicum hallii47.2547.0196.28645forward

Expression of CNT30221833

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MKVVRELGLERHETVRFLFTVGVKGRTMRSHP*

>peptide 2 (29 aa)
TFTCESKSSCRTPSFLILVLAFFIFRRGL*

Sequence

>CNT30221833
GCACTTTCACGTGTGAATCGAAGTCGTCTTGCCGAACTCCTTCCTTTCTCATTTTAGTCCTCGCCTTTTTCATCTTCCGTAGGGGCCTTTAGTCTTTTGA
TTAGAGTAGAGGTCGCGAGAGAGCAGAGCATACCGCCCTGCCATAGTCGCGAGGATCTTAATAGTCGGTCGCGACTGTTGTCATAGTCAACGACGGTTGA
AACTTCCAGGAAAAAACTTCGAATTGGGAGGGCGATCCTCCCGGTGAATTGACCGTACCCCAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCAC
GTCGAGAGAACCATGTCGAAGGAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGTGCTCTCCTATCTTTTGATTAGGAAAGCGGCACATACCAG
GGGGTAGCGAAATTCCTTGTCGCATAAGTAGAGACCTGCACGAATGGTGTAACGACTGCCCCGCTATCTCCGACATGGACCCGGTGAAATTGAATTCTCC
GTGAAGATGCGGAGTACCAATGGCTAGACGATAAGACCCCGTGCGCCTTGACTATAGCTTCGCAGTGACAACCTTGATCGAATGTGTAGGATAGGTGGGA
GGTGGTGACACACAACGACCAATCCTGAAAGACCACTCTTTCGTCTAAGGATGCCTAACCGCCGCACCGATCATTCAGGGGGGGCGGGACACTGCGAGGT
GGGTAGTTTATCTGGGGCGGATGCCTCCTAAAGAGTAACGGAGGTGTCGAAGGTAGGCTCAAGCGTTGATTCTGCTCGTGAGCGTAATGGTGTAAGCCTG
CCTGACTGTGAGACCGACTGGTCGAACAGAGACGAAAGTCGGCCATAGTGATCCAGGAGTCCCGTGTGGAAGGGCTCTCGCTCAACGGATCAAAGGTACG
CCGGGGATAACAGGCTGATGACTCCCAAGAGCTCTTATCAACGGAGTCGTTTGGCACCTCGATGTCGACTCATCACATCCTGGGGTTGAAGAAGGTCCCA
AGGGTTCGGTTGTTCGCCGATGAAAGTGGTACGTGAGTTGGGTTTAGAACGTCATGAGACAGTTCGGTTCCTATTTACCGTTGGTGTTAAAGGGAGAACT
ATGAGGAGCCATCCCTAGTAAGAGAGGACTGGGTTGGGTCAACCTATGGTGTACCGGTTGTTATGCCAATAGCAGCGCCGGGCAGCTAAGTTGGTATGGA
AGAACTGCTACGCCGCGGGAAATCCTTCTCTATACAAGTTCTCGTACGAGGTTTTTGAACAGAACTTCGATAGGCGAGAGGTGTTAGCACCGTGAGGTGT
GAAGCGATCTCGTACTAAACGAATGGAAATTGACAACAATAAAAAAACATAACTTAGAAAGAGAG