Detailed information on CNT30221820


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6YXL8|PSBF_PHYPA, E-value = 3e-07

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3020910Hordeum vulgareCitrullus lanatus2.6923.8788.6853reverse complement
CNT30555951Hordeum vulgareOryza glaberrima11.0226.4390.32217reverse complement
CNT30666971Hordeum vulgareTriticum dicoccoides3.527.0689.8669reverse complement
CNT30355329Hordeum vulgareLactuca sativa14.1139.1582.73278reverse complement
CNT30149874Hordeum vulgareBrachypodium distachyon13.1520.0989.96259reverse complement

Expression of CNT30221820

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MVSIADCLFMLVMVEGKITLEGDCMAVINMARISKNTKVQLDYQDRL*

>peptide 2 (54 aa)
MFFFKRAPWCPCTTTNIRYVALYYETEGALHIPVNQHCDEVVHLARSSSNVNSR*

>peptide 3 (54 aa)
MAGYSWTSCRYLLSCFLYQYQQCSPSNDKPNSNYRTMTQSNLNEQNVELNCTSL*

>peptide 4 (68 aa)
MVCCDFTTCITSGVNGATATARCEMKVDTQSGLYSTIHRHKNHVYITAISCWHCVDNDTVTCIRVHTE*

>peptide 5 (81 aa)
MVVSICAMVVVTVTAILTITIVAVLSKLLAIIIICSRRVFVSRLLICKIDSFFSHSRSPCPFPYTSTTKKPSNNIETSVMNK

Sequence

>CNT30221820
GCCAGCAATTCAGAGAGATATGACATAAAATCCAGCTGATCCATACAGCAATATCATACATATAAGGGGTGATAGCATACATATAAAAGGTTAGCTTGCA
ACGGATAACATCCCTCCGCTGGCCAATTAACGGTATGCAATCTGCACTTCAACTTTACCATGGTCAGCATTGCAGATTGTCTTTTCATGCTGGTCATGGT
TGAAGGTAAGATCACCTTGGAAGGAGATTGTATGGCCGTCATTAACATGGCCAGAATTAGTAAAAACACAAAGGTTCAGCTTGATTATCAAGATCGGCTC
TAAGTATATCGGAACAGCTGCCCATGTCCGCAACAATGGAAGTCTGCCATCAATAACCTCTGCCTTATCATCTTGTCCACACTGAAAAAGCAGGACATTA
TAGTCGCCATAGAACTGATGGTGTGCTGTGATTTCACCACATGCATAACATCCGGTGTCAATGGAGCTACAGCCACTGCCAGATGTGAGATGAAGGTTGA
TACACAATCTGGCCTGTATAGCACGATACATCGGCACAAAAATCACGTCTATATCACGGCCATATCTTGTTGGCATTGTGTGGATAATGACACTGTTACA
TGCATAAGGGTCCACACAGAATAGGTAGTTTGCTATGTCAATCCGGTTATCATCCTCTGGGATTTCAACTCTAATGCGGAAATAGTCCTCAAGTGCCGCC
CCTTCTGCCCTGAGAATCAAATTACCCTGCACAAATGGCATTGGAATAAAATGATTCAAAAGATACAAAAAAAACAGAGATAAAGACATACTGCCTTCAT
CTCAAGGAATTAAGGTAGGTTGTTTAGTCTGGAATTCCATTAATAACCGGCCATTTTGATTCTTCAAAATAACTCGATGAATTAGTAGATCCTTTTAGGA
GGCCCTCAATAACCATAGATCGAACCTATCCTATTTTTACAATGTGATGGCTGGCTATTCATGGACTAGCTGTAGGTACCTACTATCTTGTTTCTTGTAT
CAATATCAGCAATGCAGTCCATCCAATGATAAACCAAATTCCAACTATAGAACAATGACACAATCAAACCTGAATGAACAAAATGTTGAATTGAACTGTA
CCAGCCTATAACTCCAAAATAGATTGCCAATGAATCATAAGGGAAATTGTCTTAAAAAGTTCTAAAATCCTATGAGAAAAGGTTCTAAGGATGTAAATCC
TATAAAAGCATGTGAAATTTCTTTCAATCAAAGAAGCCCTAAGTAGCGCTCTACTATGGAAAGTCTTTTTTCTGTACGCCACTTATGAATGTAAAATGAA
ATGAATTTTTGAACCTGTGTAGCATATATGCGTGTGTGTTTGCAAAAAGTTTTGGATTTTGTTGTGCAGTAAAAAATGTTTTTCTTTAAACGGGCACCAT
GGTGCCCGTGCACAACTACGAATATTCGCTATGTAGCACTCTACTATGAAACAGAGGGTGCACTGCATATACCTGTGAATCAACATTGCGATGAGGTTGT
CCATTTAGCGAGGAGCAGTAGTAATGTGAACAGTCGCTGAAAGCAACGAAGGTGCCCACAAAGGGAAATCGGGGACGCACAGATAACAGCTCCACCAAGT
GCCGAGAGTAGCTGTAAGCAACATGTAGATTCTTGCTGTCTCCGTGATAGCCAATTTTCAGACACGGTGGAATATCCTTTCTGTAGTCATCTCCACCTCC
GTCAGAGTAGTCACCATCTGTGTCATGGTAGTCTCCATCTGTGCCATGGTAGTCGTCACAGTTACTGCAATCCTCACCATCACTATTGTGGCCGTACTCA
GCAAGCTGCTCGCTATAATCATCATCTGCAGCAGGAGAGTTTTTGTCTCCCGTTTGCTCATCTGCAAGATTGACAGTTTCTTCTCTCATTCCCGTTCCCC
TTGCCCTTTCCCTTACACCTCTACTACAAAAAAGCCGTCGAACAACATCGAGACTTCCGTAATGAATAAA