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Detailed information on CNT30221752


BLAST search results

BLAST vs Swiss-Prot:
sp|P26667|RBS2_WHEAT, E-value = 2e-93

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672909Hordeum vulgareSetaria viridis51.4248.6682.56344forward
CNT30521106Hordeum vulgareSetaria italica53.8149.6682.22360forward
CNT30181095Hordeum vulgareSecale cereale84.936.8494.01568forward
CNT30288857Hordeum vulgareTriticum aestivum88.9446.6792.77595forward
CNT30387665Hordeum vulgareTriticum turgidum92.38100.8292.88618forward
CNT30555612Hordeum vulgareOryza glaberrima56.235.9887.77376forward
CNT30436767Hordeum vulgareAegilops tauschii98.888.6193.8661forward
CNT30252135Hordeum vulgareAvena sativa57.8544.4891.47387forward
CNT30658325Hordeum vulgareTriticum dicoccoides88.6482.1393.93593forward
CNT30136970Hordeum vulgareLolium perenne57.760.4188.6386forward
CNT30681645Hordeum vulgareTriticum urartu67.8631.0396.48454forward
CNT30720492Hordeum vulgareTriticum spelta46.6462.0396.79312forward
CNT30597241Hordeum vulgareOryza meridionalis45.7435.1385.95306forward
CNT30371468Hordeum vulgareOryza glumipatula37.6721.8986.11252forward
CNT30150944Hordeum vulgareBrachypodium distachyon55.0155.0989.4368forward
CNT30104669Hordeum vulgareOryza rufipogon55.3144.6387.03370forward
CNT30578612Hordeum vulgareOryza barthii45.7427.0687.58306forward
CNT30118025Hordeum vulgareOryza nivara44.8425.9387300forward
CNT30556975Hordeum vulgarePanicum hallii53.6644.9384.12359forward
CNT30551876Hordeum vulgareOryza brachyantha52.7741.0586.12353forward

Expression of CNT30221752

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MLVHTQIIEKKIMLWSESRVVDKSEVHKRPSYDIGHSFTS*

>peptide 2 (31 aa)
MHICSTTYARTYTDHREENYALVGKQSRGQK*

Sequence

>CNT30221752
GAGACATCCATTGCAGTGCTAAATAAAATAAACTTTTCCGATAATTAACAGCAAGACAATGGTCCGCTTGTTGTATATATTATAAATATGACACAGGTGT
TGTATATGTGTAGGCGGTGCTAGAATTTACATATGCATATATGCTCCACAACCTATGCTCGTACATACACAGATCATAGAGAAGAAAATTATGCTCTGGT
CGGAAAGCAGAGTCGTGGACAAAAGTGAAGTTCACAAAAGACCTTCATACGACATAGGCCATTCTTTCACCTCGTAGTTTATGCCTTGCCGGACTCCTCG
CAACCCGGTGGCCTGAAGGCGATGAAGCTGACGCACTGCACCTGCCGCAGGTTGTCGAAGCCGATGATACGGACATAAGCGTCAGGGTACTCCTTCTTGA
CCTCCTCCACCTCGTTAAGCACCTGTGTGGCGTCGGTGCATCCGAACATAGGCAGCTTCCACATTGTCCAGTATCGGCCGTCGTAGTACCCGGGGGAGCT
GTTGTGCTCACGGAAGACGAAGCCAACCTTGCTGAACTCGAGGCAGGGCACCCACTTGGAGCGGATCAGGTAGTCGACCTGCTTCAGGAGGGCCTCCGTG
GAGAGGGGTGGCAAGTAAGACAGGGTCTCGAACTTCTTGATGCCCTCAATGGGCCACACCTGAATGATT