Detailed information on CNT30221733


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30524665Hordeum vulgareSetaria italica53.827.2992.94170reverse complement
CNT30300309Hordeum vulgareTriticum aestivum96.252.2397.37304reverse complement
CNT30396961Hordeum vulgareTriticum turgidum25.958.0192.6882reverse complement
CNT30555990Hordeum vulgareOryza glaberrima53.1610.7192.86168reverse complement
CNT30435234Hordeum vulgareAegilops tauschii56.6556.1197.21179reverse complement
CNT3010052Hordeum vulgareZea mays64.5682.2692.65204reverse complement
CNT30366171Hordeum vulgareSorghum bicolor49.0514.2292.26155forward
CNT30369387Hordeum vulgareOryza glumipatula79.7559.2989.29252reverse complement
CNT30320861Hordeum vulgareAsparagus officinalis20.255.9489.0664forward

Expression of CNT30221733

Peptides detected in this lncRNA

>peptide 1 (29 aa)
YQIHHKFGKKHKVSRPDSLNDASIRYSDI*

>peptide 2 (35 aa)
MKLYKRIFRISLDLDRARQEFFAIYDFIFLLLEVL*

Sequence

>CNT30221733
CTTATCAAATCCACCATAAATTTGGAAAGAAGCATAAAGTAAGTAGACCTGACTCCTTGAATGATGCCTCTATCCGCTATTCTGATATATAAATTCGATG
TAGATGAAATTGTATAAGCGAATTTTTCGTATTTCCTTAGACTTAGACCGCGCAAGACAAGAATTTTTCGCTATTTACGATTTCATATTCTTGTTACTAG
AGGTTCTATAGGAATAAGAAGAAATCGCAACTCCTTTGCGCTACACATAAAAATTGATTTCGAAGGTCCTTTTTTTTTTCAGAATCCTCCATTTTAGTTC
TTCCCCCCTTGTCATA