Detailed information on CNT30221722


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONZMAT001310, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677083Hordeum vulgareSetaria viridis37.8651.8295.15371reverse complement
CNT30378667Hordeum vulgareArabidopsis thaliana29.3925.7495.83288reverse complement
CNT30525072Hordeum vulgarePhaseolus vulgaris43.2799.394.58424forward
CNT30503431Hordeum vulgareNicotiana attenuata47.3533.696.55464forward
CNT3088853Hordeum vulgareVigna radiata27.2465.9395.88267forward
CNT30511396Hordeum vulgareSolanum lycopersicum31.7333.9994.86311reverse complement
CNT30552256Hordeum vulgareOryza glaberrima26.4310099.23259forward
CNT30664460Hordeum vulgareTriticum dicoccoides32.8688.9599.38322reverse complement
CNT30352524Hordeum vulgareEragrostis tef19.5945.8297.92192forward
CNT30357533Hordeum vulgareLactuca sativa22.4521.6194.09220reverse complement
CNT30103046Hordeum vulgareOryza rufipogon87.7666.1598.02860forward
CNT30576679Hordeum vulgareOryza barthii21.7340.5797.65213reverse complement
CNT3039583Hordeum vulgareMarchantia polymorpha2560.4994.69245forward

Expression of CNT30221722

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MLIFNSPKHFVACYALPRLWVPRYPPQAFPLLAQS*

>peptide 2 (44 aa)
QRKGARSVSYYALFKGWLLLGKPPGCLCTPTSFITERSFRGLSW*

Sequence

>CNT30221722
TCAGCGCAAGGGCGCTCGATCAGTGAGCTATTACGCACTCTTTAAAGGGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTTTGCACCCCCACCTCCTTT
ATCACTGAGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCGACGATGAAGCTTATCCCCCATCGTCTCACTGGCCGACCTTGACC
CCTGTTATTTTTGGGTCATATCTAGTATTCAGAGTTTGCCTCGATTTGGTACCGCTCGCGCAGCCCGCACCGAAATAGTGCTTTACCCCTAGATGTCCAG
TCAACTGCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTTTGGGTTCGAGTAGCATTTCACCCCTAACCACAACTCATCCGCTGATTCTTCAACA
TCAGTCGGTTCGGACCTCTGCTTAGTTTCATCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGAT
TCACATGGGATTCCACGTGCCCCATGCTACTCGGGTCAGAGCATAAGCTAGTGATGCTTTCGGCTACTGGACTTTAGCCATCTAGGGTGCGGCACTCAAC
CGCTTCGCCTAGCAGCACAACGCTTGTATTGCTCTCCCACAACCCCGTTTTCACGGTTTAGGCTGCTCCCATTTCGCTCGCCGCTACTACGGGAATCGCT
TTTGCTTTCTTTTCCTCTGGCTACTAAGATGTTTCAGTTCGCCAGGTTGTCTCTTGCCTGCTCATGGATTCAGCAGGCAGTTTAAAAGGTTGACCTATTT
GGGAATCTCCGGATCTATGCTTATTTTCAACTCCCCGAAGCATTTCGTCGCTTGCTACGCCCTTCCTCGTCTCTGGGTGCCTAGGTATCCACCGCAAGCC
TTTCCTCTTTTGGCACAGAGTTAGCCGATGCTTATTCCTCAGATACCGTCATTGTTTCTTCTCCGAGAAAAGAAGNNNNN