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Detailed information on CNT30221624


BLAST search results

BLAST vs Swiss-Prot:
sp|Q09020|PR4_PHAVU, E-value = 8e-20

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30524561Hordeum vulgareSetaria italica21.5312.5387.67146forward
CNT30533654Hordeum vulgareEucalyptus grandis17.424.0887.29118forward
CNT30180424Hordeum vulgareSecale cereale51.0353.4892.49346forward
CNT30387746Hordeum vulgareTriticum turgidum65.6377.1290.11445forward
CNT30249706Hordeum vulgareAvena sativa21.5322.5396.58146forward
CNT30467515Hordeum vulgareSaccharum spontaneum22.2720.5286.75151forward
CNT30135597Hordeum vulgareLolium perenne21.5328.2495.89146forward
CNT307034Hordeum vulgareZea mays21.5318.588.36146forward
CNT30346089Hordeum vulgareEragrostis tef20.524.7388.49139forward
CNT30597257Hordeum vulgareOryza meridionalis21.5329.2691.78146forward
CNT30371492Hordeum vulgareOryza glumipatula21.5327.1991.1146forward
CNT30108688Hordeum vulgareOryza longistaminata21.5326.0291.78146forward
CNT30104475Hordeum vulgareOryza rufipogon21.5325.9891.78146forward
CNT30578401Hordeum vulgareOryza barthii21.5326.1291.78146forward
CNT30581754Hordeum vulgareEchinochloa crusgalli22.2719.7486.75151forward
CNT30118085Hordeum vulgareOryza nivara21.5327.3491.78146forward

Expression of CNT30221624

Peptides detected in this lncRNA

>peptide 1 (53 aa)
IREGEGITKQPLDDWNSCVSPSPTNPSQALHIGGGGGGGSEEGEEEEEEEEER*

>peptide 2 (31 aa)
MCSRGFGIHFYMVIRVASSMLSILCLTFLPL*

>peptide 3 (48 aa)
MIYDVNSPLFRSFLSQKGGASSDKRKMEEQKPKDQRFKANENKPVMNE*

Sequence

>CNT30221624
ATCCGCGAAGGTGAGGGTATAACAAAGCAGCCTCTGGACGATTGGAACTCGTGCGTCTCACCCTCTCCCACTAACCCTAGCCAAGCTCTTCACATCGGCG
GCGGCGGCGGCGGCGGCAGCGAAGAAGGAGAAGAAGAAGAAGAAGAAGAGGAAGAAAGATGATCTACGACGTGAACTCCCCCCTGTTCCGCTCCTTCCTC
AGCCAGAAGGGCGGCGCGTCCTCCGACAAGAGGAAAATGGAAGAGCAGAAGCCGAAGGACCAGAGGTTCAAGGCCAACGAGAACAAGCCTGTAATGAACG
AATGACCATCCTTCGGACAGTCCAGTGCCTGCAAGGCCTAGCTGCCAATCATGTGACTCCTATGTTAAAATGGGTGGTGTGAACATTTGCTTGGTCGTTC
TGAAAACTATCCAAGTATCCAGTACTGTGTTTTGAGTTCCTATATCTGCACTGCATGCCTGGAATGATAAATCAGTAGATTTTATCCTGTGATGTGTTCT
CGTGGTTTTGGAATCCACTTCTATATGGTGATTCGTGTAGCATCTTCTATGCTGTCTATACTATGTCTCACGTTTCTTCCTTTGTGAACAAAGCTATTTC
TCACATTCTGTCTCTCGACCTCTGCCTGTTCTTCACCTGCACTCTTTAGCCTTGTATGCTTATCTTTTTGGCGTGACA