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Detailed information on CNT30221603


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT002454, E-value = 6e-162

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696398Hordeum vulgareOryza sativa39.9210098.13481forward
CNT30730481Hordeum vulgareCorchorus capsularis85.1583.4195.321026reverse complement
CNT30490123Hordeum vulgareOlea europaea43.5730.1696.38525forward
CNT30712870Hordeum vulgareGlycine max35.8525.9994.68432forward
CNT30592527Hordeum vulgareMusa acuminata15.6856.5997.88189forward
CNT30234026Hordeum vulgareBrassica oleracea31.1294.4693.33375reverse complement
CNT30511493Hordeum vulgareSolanum lycopersicum25.1533.8996.04303reverse complement
CNT30242955Hordeum vulgareAvena sativa48.2262.2798.45581forward
CNT3082633Hordeum vulgareBrassica juncea26.1495.7495.24315forward
CNT30605266Hordeum vulgareGossypium raimondii39.6722.8495.61478forward
CNT30216578Hordeum vulgareKalanchoe fedtschenkoi77.6828.196.37936forward
CNT30689137Hordeum vulgareTriticum urartu85.8986.0397.781035forward
CNT30363124Hordeum vulgareSorghum bicolor19.09101.3290.87230forward
CNT30595572Hordeum vulgareOryza meridionalis22.5731.7496.32272forward
CNT30434643Hordeum vulgarePapaver somniferum62.32100.9492.54751forward
CNT30118490Hordeum vulgareCitrus clementina7.7220.9993.5593forward
CNT3038420Hordeum vulgareCucumis melo56.0247.2796.59675forward
CNT30577866Hordeum vulgareOryza barthii20.6615.2998.39249reverse complement
CNT30550626Hordeum vulgareOryza brachyantha25.06103.0791.06302reverse complement

Expression of CNT30221603

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MMSMARGRALNGLGWPHFALPTPGKLRIQAVILSTDRLIGC*

>peptide 2 (45 aa)
MSNEKSCEKHDRLPVEGFLHSVNLRRVNRSLRNPRKGCRPMGTRK*

>peptide 3 (50 aa)
MTTRRWAWKQPSFEESVIAHWSSSMAPKMSQGSSDSPKRQDLESSFFKCQ*

Sequence

>CNT30221603
GATCCTTCCCAGTAAAATGCGGGGTGTTCGAATGATGATCTCTTTTACGCGAGAAAGGGGGACCACCCTCTAAGCCTAAGTATTCCTCAATGACCGATAG
CGTACAAGTACCGTGAGGGAAAGGGGGACCACCCTCTAAGCCTAAGTATTCCTCAATGACCGATAGCGTACAAGTACCGTGAGGGAAAGGTGAAAAGAAC
CCCAATCGGGGAGTGCAATAGAGAACCTAAGATCCGATGCGAACAATCAGTCGAAGGAGCGGAGCGCGGGCGCACTCACTCTAACGGTGTACCTTTCGCA
TGATGGGTCAGCGAGGAAATGGGAACAACGGCTTAAGCCATTAGGTGTAGGCGCTTTCCAGAGGTGGAAGATTTACATTCTTCCTATTTGACCCGAAACC
GATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGAGGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGG
TGAAAGGCCAACCAAGATCGGATATAGCTGGTTTTTCGCGAAATCTATTTCAGTAGAGCGTATGATGTCGATGGCCCGAGGTAGAGCACTCAATGGGCTA
GGGTGGCCCCATTTCGCTTTACCAACCCCAGGGAAACTCCGAATACAAGCCGTCATCCTTAGTACAGACAGACTGATTGGGTGCTAAGATCCAAAGTCGA
GAGGGAAACAGCCCAGATCGTACGCTAAGGTCCCTAAGCAATCACTTAGTGGAAAAGGAAGTGATCGAGCGATGACAACCAGGAGGTGGGCTTGGAAGCA
GCCATCCTTTGAAGAAAGCGTAATAGCTCACTGGTCTAGCTCCATGGCACCGAAAATGTCTCAGGGCTCAAGTGATTCACCGAAGCGACAAGACCTTGAA
AGCAGCTTTTTCAAGTGTCAGTAGCGGGACGTTCTGTCAATCGGGGAAGGTTTTTGGTGACAAGACCTGGAGATATCAGAAGTGAGAATGCTGACATGAG
TAACGAGAAATCCTGTGAAAAACACGATCGCCTGCCAGTGGAAGGCTTTCTGCATTCGGTCAATCTACGCAGAGTGAATCGGTCCCTAAGGAACCCCCGA
AAGGGCTGCCGTCCGATGGGTACACGAAAGTGACGAAGTTGCTTTGACTACTGAACCATGCCTGGATCGTCGGAGCGAATTGGATGATCGGGCCGAGGGC
TGTGT