Detailed information on CNT302216


BLAST search results

BLAST vs Swiss-Prot:
sp|P27788|FER3_MAIZE, E-value = 4e-51

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692005Zea maysOryza sativa80.2246.0786.1223forward
CNT30448124Zea maysSaccharum spontaneum85.6130.8795.38238forward
CNT30137412Zea maysLolium perenne44.629.3182.26124forward
CNT30684332Zea maysTriticum urartu15.1120.6992.8642forward
CNT30361595Zea maysSorghum bicolor61.5132.0295.32171forward
CNT30369772Zea maysOryza glumipatula43.5319.9790.08121forward
CNT30100889Zea maysOryza rufipogon80.2244.3386.55223forward

Expression of CNT302216

Peptides detected in this lncRNA

>peptide 1 (91 aa)
KSLALVQVAFLVGVDDAVGLWVGDACQHITFLLLPVIKEGPIRLVNRTRLDFAGTGGASPSTARVWQLHTGSLGCVKDVFRLGTFVTWLKKL

>peptide 2 (66 aa)
MSAHNLPPAARHQGRTHPTGQPNQTRFCRHRWSKPQHGTSMATPHRQSRLRQGCLQAWNLRNLAEEA

Sequence

>CNT302216
GAAAATCCCTAGCCCTAGTACAGGTCGCCTTCCTTGTGGGTGTGGATGACGCAGTCGGACTTTGGGTAGGAGACGCATGTCAGCACATAACCTTCCTCCT
GCTGCCCGTCATCAAGGAAGGACCCATCCGACTGGTCAACCGAACCAGACTCGATTTTGCCGGCACAGGTGGAGCAAGCCCCAGCACGGCACGAGTATGG
CAACTCCACACCGGCAGTCTCGGCTGCGTCAAGGATGTCTTCAGGCTTGGAACCTTCGTAACTTGGCTGAAGAAGCTT