« Back to Hordeum vulgare search


Detailed information on CNT30221546


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONZMAT000139, E-value = 2e-68

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694973Hordeum vulgareOryza sativa89.9124.3894.15205forward
CNT30671877Hordeum vulgareSetaria viridis80.79292.39184forward
CNT30520246Hordeum vulgareSetaria italica93.4222.6692.49213forward
CNT30180108Hordeum vulgareSecale cereale91.6795.4394.26209forward
CNT30289434Hordeum vulgareTriticum aestivum88.1634.7293.53201forward
CNT30392320Hordeum vulgareTriticum turgidum85.099788.14194forward
CNT30554471Hordeum vulgareOryza glaberrima89.9137.2194.15205forward
CNT30436341Hordeum vulgareAegilops tauschii71.9353.9594.51164forward
CNT30251924Hordeum vulgareAvena sativa89.9137.6893.66205forward
CNT30444735Hordeum vulgareSaccharum spontaneum92.5436.9592.89211forward
CNT30681546Hordeum vulgareTriticum urartu90.7994.5297.1207forward
CNT30721558Hordeum vulgareTriticum spelta90.3591.9688.83206forward
CNT30341741Hordeum vulgareEragrostis tef82.8931.1990.48189forward
CNT30361377Hordeum vulgareSorghum bicolor85.9617.4193.37196forward
CNT30596646Hordeum vulgareOryza meridionalis92.5428.6392.42211forward
CNT30370660Hordeum vulgareOryza glumipatula89.9135.7194.15205forward
CNT30106627Hordeum vulgareOryza longistaminata84.6595.0791.71193forward
CNT30148227Hordeum vulgareBrachypodium distachyon73.6866.6794.05168forward
CNT30102628Hordeum vulgareOryza rufipogon89.9116.1594.15205forward
CNT30577143Hordeum vulgareOryza barthii89.9140.4394.15205forward
CNT30496422Hordeum vulgareDigitaria exilis89.9133.2388.29205forward
CNT30117165Hordeum vulgareOryza nivara89.9145.7694.15205forward
CNT30593977Hordeum vulgareEragrostis curvula82.4684.6892.02188forward
CNT30604388Hordeum vulgareOryza punctata62.2842.7795.77142forward
CNT30556620Hordeum vulgarePanicum hallii93.4221.6594.84213forward
CNT30551356Hordeum vulgareOryza brachyantha61.440.4695140forward

Expression of CNT30221546

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MLFTMRMQRNPLPTSLLSVHSTDSSMYSGL*

>peptide 2 (37 aa)
RGGSSSAGCRPRTTSRARPRCRRGRRRGPCRRGRRRS*

>peptide 3 (39 aa)
QGRIFQRWLSPSHHFQSTTSVPSWTPPWALSPWKASKLR*

>peptide 4 (75 aa)
PGEDLPALVVALAPLPEHDLGAVVDAAVGLVAVEGVEVEVDVVHHADAAEPLAHVPALRPQHRLVHVLRVVTHKLH

Sequence

>CNT30221546
CCAGGGGAGGATCTTCCAGCGCTGGTTGTCGCCCTCGCACCACTTCCAGAGCACGACCTCGGTGCCGTCGTGGACGCCGCCGTGGGCCTTGTCGCCGTGG
AAGGCGTCGAAGTTGAGGTAGATGTTGTTCACCATGCGGATGCAGCGGAACCCCTTGCCCACGTCCCTGCTCTCCGTCCACAGCACCGACTCGTCCATGT
ACTCCGGGTTGTAACCCACAAGCTTCAC