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Detailed information on CNT30221525


BLAST search results

BLAST vs Swiss-Prot:
sp|Q37550|ATP9_MALDO, E-value = 2e-23

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30537800Hordeum vulgareEucalyptus grandis27.116.6186.84228forward
CNT30550185Hordeum vulgareIpomoea triloba26.5252.7293.72223forward
CNT3020733Hordeum vulgareCitrullus lanatus15.127.6793.7127forward
CNT3047959Hordeum vulgarePrunus dulcis13.5621.3589.47114reverse complement
CNT30438768Hordeum vulgareAegilops tauschii24.14101.595.57203forward
CNT30141896Hordeum vulgareLolium perenne29.2520.3687.4246forward
CNT30628273Hordeum vulgareDaucus carota25.0934.6588.15211forward
CNT30688194Hordeum vulgareTriticum urartu96.5594.0997.78812forward
CNT3036889Hordeum vulgareCucumis melo27.4713.3887.01231forward
CNT30104673Hordeum vulgareOryza rufipogon28.6634.3895.02241forward

Expression of CNT30221525

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MRTTNFIHIITICKACHIFKKMSCGLKIIRYR*

>peptide 2 (33 aa)
MARKSMCNNYLKKVKNSLLGFSWREKPSSYICE*

>peptide 3 (68 aa)
MNQRTEDVSIPTAAPAKAIVAAPTPIDLAPSNISSRENTFLVTFFLRCSFLDFLLMIRSTWACTSIIF*

Sequence

>CNT30221525
TGTAACTACATTCTCACATTTCTTTTTTGATCTCATGACTCTTTATGCGATCGGAAAATGAATGAGATCAGAAAGGCCATCATTGGGGCAAACAATGCAA
TAGCTTCGGTGAGAGCAAAGCCCAAAATGGCATAACTAAATGATTGTTTAGCCAATGATGGATTTCGCGCCACGGAATGAATCAAAGAACTGAGGACGTT
TCCATACCGACAGCAGCTCCGGCTAAAGCAATTGTAGCAGCTCCGACACCTATTGATTTAGCACCTTCTAACATCTCGAGTCGAGAAAACACTTTTCTTG
TCACGTTTTTCCTTCGCTGTTCTTTCTTGGATTTCTTGTTGATGATTCGAAGTACTTGGGCCTGCACCTCCATAATTTTCTAATATTGGGTTATGCGGAC
CACTAATTTTATACATATTATCACAATTTGCAAGGCTTGTCACATATTCAAGAAAATGAGCTGTGGATTGAAAATCATCAGGTATAGGTAATCATCAGGT
ATAGGTATAGGTAGGGGGTCCGTCAACCCTTGTGGGGCTGGGTGGGGTATCCTGAACTACTGGAGCAGCTCCCCCTTGTGGCTGGGGTAGACTCTCAGCA
GCTTGGTTTACGCATGGCACGAAAATCTATGTGTAATAATTATTTGAAAAAAGTCAAAAATAGCCTATTGGGGTTCAGTTGGCGAGAAAAGCCTTCTTCC
TACATCTGCGAGTAAGGGGCAACCTTTTTGATTAATTCACAGGTAAGGCAAAGTGCTTTCTTTTAAAGAAGCATCTGGTTCCATCTTTCTTTCGTTAGTT
AAGCCACCTTTTTCTAAGAAGGATTTTTGTAATTCTGGATT