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Detailed information on CNT30221494


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697843Hordeum vulgareOryza sativa75.629.9798.62939reverse complement
CNT30548882Hordeum vulgareIpomoea triloba46.5421.9398.27578forward
CNT30632593Hordeum vulgareVigna unguiculata47.3434.8396.77588forward
CNT30309155Hordeum vulgareTriticum aestivum62.7235.1499.23779reverse complement
CNT30400948Hordeum vulgareTriticum turgidum62.7231.1699.49779reverse complement
CNT30585815Hordeum vulgareMusa acuminata46.6223.8695.68579forward
CNT30147389Hordeum vulgareMedicago truncatula46.8662.9298.11582reverse complement
CNT30440683Hordeum vulgareAegilops tauschii29.7938.399.19370forward
CNT30248040Hordeum vulgareAvena sativa61.1956.4698.55760reverse complement
CNT30662061Hordeum vulgareTriticum dicoccoides61.6739.9299.35766reverse complement
CNT3081478Hordeum vulgareBrassica juncea26.4928.4193.31329forward
CNT30143344Hordeum vulgareLolium perenne75.641.9899.47939reverse complement
CNT3016633Hordeum vulgareZea mays64.5741.9798.5802reverse complement
CNT30229838Hordeum vulgareAnanas comosus32.5391.297.52404reverse complement
CNT30218527Hordeum vulgareKalanchoe fedtschenkoi46.8639.0998.63582reverse complement
CNT3067373Hordeum vulgareLeersia perrieri15.0661.9297.86187forward
CNT30655299Hordeum vulgareRosa chinensis46.4620.3398.27577forward
CNT30209728Hordeum vulgareHelianthus annuus46.4649.8796.19577forward
CNT30689128Hordeum vulgareTriticum urartu62.6441.8598.97778forward
CNT30434588Hordeum vulgarePapaver somniferum11.2741.6791.43140forward
CNT3037914Hordeum vulgareCucumis melo32.1318.7588.97399forward
CNT30582488Hordeum vulgareEchinochloa crusgalli64.0965.5799.62796forward
CNT30116696Hordeum vulgareOryza nivara75.623.6898.72939reverse complement

Expression of CNT30221494

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MTGLEEEAPANSVPAAAVRRGGQVFFGMTGRKGT*

>peptide 2 (31 aa)
MFSSRPGSPGSTTVRPNHSQNLSLILAQKER*

>peptide 3 (46 aa)
VVGVDYLVKLWRDGEREERTLPSKKDSSQMDLLVYDDQVEASVPHR*

>peptide 4 (42 aa)
MMLSWSFRMISHTGTETRPGLPRGAAVGNLGQWAKARSSNIA*

>peptide 5 (38 aa)
LLAWIILLSSGEMVSVKKGHYHQRKTALKWICWSTMTK*

>peptide 6 (35 aa)
MQVERCFRGAGQKEKRLLAKVVSPCFKTTGRALRL*

Sequence

>CNT30221494
GGTTGTTGGCGTGGATTATCTTGTTAAGCTCTGGAGAGATGGTGAGCGTGAAGAAAGGACACTACCATCAAAGAAAGACAGCTCTCAAATGGATTTGCTG
GTCTACGATGACCAAGTAGAAGCATCCGTTCCACATAGGTGATTTTTATAGAAGCATAGGCGCAAGCTCTTCTCAAAAGAATTTCGTTTATAGGATTCAG
TCGTCCGTTTGTTTTGTTTTGAATTGACATAGAGAAATCTTTCTCGCGTTCCCTTAATTCAGGAATAGGTGGCGAAGGCTACTTGTTCCTTGTATATATA
TATAAAGGAAAGGGGTTATTTTTCCTTTACGGCAATAAGAGTTGATTCCCTTGCTTGTAGTTTTGGATCGATTCCGTGTATTTCACATATTTAAGAGTGG
TTAGGAGAGAGAATCAATGTTTAGTAGTAGGCCCGGTTCACCAGGTTCTACCACTGTTCGGCCCAATCATAGTCAAAATCTGAGTTTGATCCTGGCTCAG
AAGGAACGCTAGCTATATGCTTAACACATGCAAGTCGAACGTTGTTTTCGGGGAGCTGGGCAGAAGGAAAAGAGGCTCCTAGCTAAAGTTGTCTCGCCCT
GCTTCAAAACTACAGGGCGCGCGCTACGGCTTTGACCTAACGGCCTCCGTTTGCTGGAATCGGAATAGTTGAGAACAAAGTGGCGAACGGGTGCGTAACG
CGTGGGAATCTGCCGAACAGTTCGGGCCAAATCCTGAAGAAAGCTCAAAAGCGCTGTTTGATGAGCCTGCGTAGTATTAGGTAGTTGGTCAGGTAAAGGC
TGACCAAGCCAATGATGCTTAGCTGGTCTTTTCGGATGATCAGCCACACTGGGACTGAGACACGGCCCGGACTCCCACGGGGGGCAGCAGTGGGGAATCT
TGGACAATGGGCGAAAGCCCGATCCAGCAATATCGCGTGAGTGAAGAAGGGCAATGCCGCTTGTAAAGCTCTTTCGTCGAGTGCGCGATCATGACAGGAC
TCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCAAGTGTTCTTCGGAATGACTGGGCGTAAAGGCACGTAGGCGGT
GAATCGGGTTGAAAATGAAAGTCGCCAAAAAGTGGCGGAATGCTCTCGAAACCAATTCACTTGAGTGAGACAGAGGAGAGTGGAATTTCGTGTGTAGGGG
TGAAATCCGTAGATCTATGAAGGAACGCCAAAAGCGAAGGCA