CANTATAdb - search

Detailed information on CNT30221452

BLAST search results

BLAST vs Swiss-Prot:
sp|P06353|H33_HORVU, E-value = 8e-26

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30125320	Hordeum vulgare	Physcomitrium patens	20.95	13.16	85.16	128	forward
CNT30508643	Hordeum vulgare	Solanum lycopersicum	20.95	16.64	82.81	128	forward
CNT3058538	Hordeum vulgare	Amborella trichopoda	20.46	11.58	83.2	125	forward

Expression of CNT30221452

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MDGAQVGVLEETHQVGLCSLLKGKHRMALEAEVSLHRHTDGAFSLLD*

>peptide 2 (39 aa)
MWMLQDDQRTNDPALEHSTTQNIVLTYYYRRLILVVHDT*

>peptide 3 (42 aa)
NLTSPRATSTEGPPYSNLHHRDTNKTRHRHIITVHTITNPRT*

Sequence

>CNT30221452
GCAACCTGACTAGCCCTCGTGCTACTAGCACAGAAGGACCCCCCTATTCAAACTTGCATCACAGAGATACAAATAAAACGAGACACAGGCACATAATAAC
AGTTCACACAATCACTAATCCTCGAACATAAAATGTAAGGTTCAGATAAGAACCCGCCATGTGGATGCTTCAGGACGACCAACGAACAAATGATCCAGCT
CTAGAACATAGTACGACACAGAATATAGTACTGACATATTACTACAGACGACTAATATTAGTAGTTCACGACACATGATAAGTGTTCAGCAGCAAAAGCA
GACACACGGAGCTATGCCCACCAGAGCCATTCCCACAGGCAAAGCAGCTTAAGCCCTCTCGCCACGGATCCTCCTAGCCAGCTGAATGTCCTTGGGCATG
ATGGTCACACGCTTGGCATGGATGGCGCACAGGTTGGTGTCCTCGAAGAGACCCACCAGGTAGGCCTCTGCAGCCTCCTGAAGGGCAAGCACCGCATGGC
TCTGGAAGCGGAGGTCAGTCTGCACAGACACACCGACGGTGCTTTTAGCTTACTTGATTGATAAGAATTTGACATAACAGGAGCATAGCAATGCAGTGCA
CAAGTTGATTG