Detailed information on CNT30221290


BLAST search results

BLAST vs Swiss-Prot:
sp|P27523|CB23_HORVU, E-value = 1e-28

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30243592Hordeum vulgareAvena sativa55.7115.7895.9122forward
CNT30132971Hordeum vulgareLolium perenne55.7121.7193.44122forward
CNT30496156Hordeum vulgareDigitaria exilis55.7113.1589.34122forward
CNT30604338Hordeum vulgareOryza punctata55.7118.0587.7122forward

Expression of CNT30221290

Peptides detected in this lncRNA

>peptide 1 (63 aa)
LNSTPTHFWSTSGKTHPRAPSIAHRPWITSSALFLANASGYLTRSGPYHKSLPCERARTPDNR*

>peptide 2 (30 aa)
LELDAHPLLEHLGEDAPKSAEHRPPAVDHL*

Sequence

>CNT30221290
CTTGAACTCGACGCCCACCCACTTCTGGAGCACCTCGGGGAAGACGCACCCAAGAGCGCCGAGCATCGCCCACCGGCCGTGGATCACCTCTAGCGCCCTG
TTCCTAGCGAACGCCTCCGGGTACTTGACGCGGTCCGGGCCGTACCACAAGTCGTTGCCCTGCGAGCGCGCGCGCACACCAGACAATCGTTAGCTCTTAG
CACGCACAGATGCTAGTAG