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Detailed information on CNT30221247


BLAST search results

BLAST vs Swiss-Prot:
sp|P14226|PSBO_PEA, E-value = 1e-35

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674885Hordeum vulgareSetaria viridis22.3333.4393.28119forward
CNT30317789Hordeum vulgareCorylus avellana17.2645.3284.7892forward
CNT30700663Hordeum vulgareQuercus lobata21.3921.5183.33114forward
CNT3010265Hordeum vulgareZea mays21.5815.9591.3115forward
CNT30681068Hordeum vulgareTriticum urartu62.2933.6793.37332forward
CNT30621504Hordeum vulgareCajanus cajan20.086.7984.11107forward
CNT30319039Hordeum vulgareAsparagus officinalis19.5144.0786.54104forward
CNT30557822Hordeum vulgarePanicum hallii24.5818.7793.13131forward

Expression of CNT30221247

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MSLVFWKALTVKESTPPSMVGHWFAVPVPFTSM*

Sequence

>CNT30221247
GTTAAAACGAAGGAAGTGTCACCAAATTTGTGAACATACACATTCATGGGGGATCAATATCATGAGCTGGTGAGCAAGAAATGATAACAGAAGCTAAAAT
ATAAACCGATCACTCTGGTTTTATACTAGATACACACACAAACACATTGTTGCCTCGATTCTTTCCTCTCCACCGACCAACCCACGTATGCATGCACAAA
AGATGAGTATCTTCACTTCTGCTATGCTCTAGTTAGACTCGAGCTGCGCGTACCACACACCCTGGATCTTGACATCCTTGGGCGCCTTGGCGCCGAGCTG
CTTGACGGTGAAGAGGAACGGCACGCGCTCGCCTCCGGGGAGCTGCACTGTGACGGCCGCGTAGGTGTAAGTGAGACGGGTCATGAGCTTGGTCTTCTGG
AAGGCCTTGACGGTGAAGGAGTCGACGCCGCCGTCGATGGTCGGGCACTGGTTCGCGGTGCCGGTACCCTTCACCTCCATGTAGGTCTTGCTCTGGATTT
CGTCGAAGGTCAGCCTCTTGGGCGCCCCCTCCG