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Detailed information on CNT30221219


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ATM5|PIP26_MAIZE, E-value = 4e-12

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695037Hordeum vulgareOryza sativa20.5717.8984.67137forward
CNT30375565Hordeum vulgareArabidopsis thaliana9.7626.3286.1565forward
CNT30437070Hordeum vulgareAegilops tauschii28.2338.0698.4188forward
CNT30612661Hordeum vulgareArabis alpina9.7622.4987.6965forward
CNT30228928Hordeum vulgareAnanas comosus14.2624.3692.6395forward
CNT30681057Hordeum vulgareTriticum urartu21.0213.7498.57140forward
CNT30362596Hordeum vulgareSorghum bicolor21.0223.6985140forward
CNT30109688Hordeum vulgareOryza longistaminata16.0720.1989.72107forward
CNT30148068Hordeum vulgareBrachypodium distachyon21.0224.1885.71140forward
CNT30575194Hordeum vulgareOryza barthii16.6754.1591.89111forward

Expression of CNT30221219

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MDAFHMLICSLEKDGSPNLSNHISENCPYLESKVLV*

>peptide 2 (39 aa)
MPPNAQAMPRIPTPLQAASAALGPAGSAWCLYPMTVATVM

>peptide 3 (67 aa)
MPRGGSDDLLGRGSHGRCAWGRWRRRRCRRARRSCRRTPRRCPGFPRRCRPRRRRWGRRGPPGACTL*

>peptide 4 (97 aa)
MRVFSPCRASLASSWTKEFEISWYACREGAVMTYWDVGVTGAALGVGGGEDGVDEHEDHAAERPGDAQDSHAAAGRVGGVGAGGVRLVLVPYDGGHGD

Sequence

>CNT30221219
CACTGCTCGATAGCTTAACTCTAGCTTAATTCATCACCATAATAAATAAACTAAAGAAAACAGCCGCCTTTGTATTTCAAAACCGTATATGCAGCAAAAA
GTAGAGCTGGCTAGGAAGAAGACATGGATGCTTTTCATATGCTGATATGCAGCCTTGAAAAGGACGGCTCACCAAATCTAAGCAATCATATCAGCGAAAA
TTGTCCCTATCTAGAATCGAAAGTGCTTGTCTAATGCCAATCACAAACGGTTTGCCGCCTCACGGTTGCTGCATAATGAATCAAATTAACTAGCTCTAGC
TAGGGACTGAACTAGTGATCAGTACTGATGAACTGCTTCAGTATCGGTAGAATATCCGGAGACCTGCTTTATGCGTGTGTTTTCTCCATGCAGAGCATCA
CTAGCTAGTTCGTGGACCAAAGAATTTGAAATCAGTTGGTACGCATGCCGAGAGGGGGCAGTGATGACTTACTGGGACGTGGGAGTCACGGGCGCTGCGC
TTGGGGTCGGTGGCGGAGAAGACGGTGTAGACGAGCACGAAGATCATGCCGCCGAACGCCCAGGCGATGCCCAGGATTCCCACGCCGCTGCAGGCCGCGT
CGGCGGCGTTGGGGCCGGCGGGGTCCGCCTGGTGCTTGTACCCTATGACGGTGGCCACGGTGATGT