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Detailed information on CNT30221182


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30541214Hordeum vulgareBrassica napus11.9228.6297.787reverse complement

Expression of CNT30221182

Peptides detected in this lncRNA

>peptide 1 (53 aa)
RLSAGESPLTASPNILPLPHHGGLQEIPETRSERLLYQTLLLNYKERKDYSSH*

>peptide 2 (57 aa)
MKSFLSIDVSGLRRYSTLREECNGMDGRGLPAPKSDDSLVPLSIGTLWHTTATTPAL*

>peptide 3 (65 aa)
GSPQGNLHSLLPLISSLYHIMGVYRRSQRLARKGCYTKHYYLTTKKEKTIVVTRLTIVVRPAALA*

>peptide 4 (39 aa)
MGIKKNRKMQIFYEILSFHRCIWSETVQYSTRGMQWDGW*

Sequence

>CNT30221182
CCGGCTCTCCGCAGGGGAATCTCCACTCACTGCTTCCCCTAATATCCTCCCTTTACCACATCATGGGGGTTTACAGGAGATCCCAGAGACTCGCTCGGAA
AGGCTGCTATACCAAACATTATTACTTAACTACAAAGAAAGAAAAGACTATAGTAGTCACTAGACTGACTATAGTAGTCCGTCCGGCTGCTCTTGCTTAA
ATCATTACTCTTCATTCTCCCGTGCTCTAGCAATTGCGCTCCCTAGACCACTACCATTTAGTTAGGTAGGGACAATCAATCCATAGTTACGGGAATAACG
GAATACATGGGGATAAAAAAAAATAGAAAAATGCAGATTTTCTATGAAATCCTTTCTTTCCATAGATGTATCTGGTCTGAGACGGTACAGTACTCTACGA
GAGGAATGCAATGGGATGGATGGTAGAGGGCTGCCTGCGCCCAAAAGCGATGATTCACTTGTCCCCTTGTCTATAGGGACCTTGTGGCATACAACCGCCA
CGACTCCTGCGTTATAGCCGCCCCTTTCTCTCTTTCTTTTGACTGCCTCGTGGACGGACGAAAGAAGGGAAGTTACAGAAGGGGGCAGTGAAGGCTCGCC
AAGTAGACAGCAAGCCCCCACCCCGTCAGTCCTGTGTTGCCGTAGCGTGCCCTACTTCAATAAGGTATTACCTCGCCGATTTTAAAGGGGATGGGATTGG
ATTCATTCACTTGCATTCCTGCTAGCACTA