Detailed information on CNT30221157


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671211Hordeum vulgareSetaria viridis33.3333.1891.4370forward
CNT30639595Hordeum vulgareNymphaea colorata32.3814.4197.0668forward
CNT30628366Hordeum vulgareVigna unguiculata81.4311.9792.4171forward
CNT30437294Hordeum vulgareAegilops tauschii54.7640.9399.13115forward
CNT30659902Hordeum vulgareTriticum dicoccoides53.3336.3698.21112forward
CNT308389Hordeum vulgareZea mays54.7652.7586.96115forward
CNT30365159Hordeum vulgareSorghum bicolor43.332782.4291forward
CNT30103950Hordeum vulgareOryza rufipogon39.5224.2798.883forward
CNT3065844Hordeum vulgareSelaginella moellendorffii27.1416.3389.4757forward

Expression of CNT30221157

Peptides detected in this lncRNA

>peptide 1 (68 aa)
AGKRRVPDFSNSSSALTPSWMSSVASPPSSTMRVSMSTAVWIVMWREPEIRAPLKGCEGPNSVRQAMRP

>peptide 2 (69 aa)
GGEEEGAGLLELLLGLDALVDEQRGVAAVVDDEGLDEHGGLDSHVEGAGDPGALEGLRGAELGAAGHEAG

Sequence

>CNT30221157
GGCGGGGAAGAGGAGGGTGCCGGACTTCTCGAACTCCTCCTCGGCCTTGACGCCCTCGTGGATGAGCAGCGTGGCGTCGCCGCCGTCGTCGACGATGAGG
GTCTCGATGAGCACGGCGGTCTGGATAGTCATGTGGAGGGAGCCGGAGATCCGGGCGCCCTTGAAGGGCTGCGAGGGGCCGAACTCGGTGCGGCAGGCCA
TGAGGCCGGG