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Detailed information on CNT3022114


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30200101Populus trichocarpaPisum sativum39.6816.1789.6250forward
CNT30283847Populus trichocarpaTriticum aestivum38.4117.7286.36242forward
CNT3054326Populus trichocarpaAmborella trichopoda22.869.8485.42144reverse complement
CNT30174619Populus trichocarpaVigna angularis28.737.2288.95181forward

Expression of CNT3022114

Peptides detected in this lncRNA

>peptide 1 (80 aa)
MRYMDSQQTIGIIQYNGMNTIPRQTHGIPPYQRKIDTMYLYCTGKKLCYGPPFFSGLSRKCGQKSIIESDHNNRIDYLHA*

Sequence

>CNT3022114
CCAAACACAGAAGAGAATAGGAAGGCTGATCCAAACCCGAGGGAATCACCAATAGCTTTTGTCTCTGGAGCTTGCATCAGAAAGTAGGCCTACATGGAAG
AATCAAAAGCAGAAATAAAATCCAACTCTGCAAAGCTATAACAGCAACAACATATGCACTCAAATAGACACAAGTGCAGTCCATAATTCAGAACAGAGAC
CAAGATTTGCAGTTCCGAGTCATGAAGGGAAGGGTATAACGAACATACCTTGTCTCCACATTGGATCGAGAACGGGGTCAGAAGGATCAAAAACTGTTAA
TTCATATAGAGCCATCGAGCTGGCCCAACCAGCAACCAAAGCTGTATGCGTTATATGGACAGCCAGCAAACGATCGGGATCATTCAATACAACGGTATGA
ACACGATACCAAGGCAAACCCATGGAATACCCCCTTATCAACGAAAGATAGACACTATGTACCTTTATTGCACTGGAAAAAAACTATGTTATGGACCTCC
CTTTTTTAGTGGATTATCTCGGAAATGTGGTCAGAAATCCATAATAGAGTCCGACCACAACAACCGAATTGATTATCTTCATGCATAAGGATACTAGATT
ACCTAGTATAAAAGATTTCAAAATCATCAC