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Detailed information on CNT30221104


BLAST search results

BLAST vs Swiss-Prot:
sp|P26667|RBS2_WHEAT, E-value = 4e-73

BLAST vs NONCODE:
NONCQUT001608, E-value = 2e-11

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30287807Hordeum vulgareTriticum aestivum62.9567.1991.54768forward
CNT30386026Hordeum vulgareTriticum turgidum69.4366.6491.62847forward
CNT30251828Hordeum vulgareAvena sativa39.6757.4887.19484forward
CNT30657592Hordeum vulgareTriticum dicoccoides53.5275.3292.34653forward

Expression of CNT30221104

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MHICSTTYARTNTDHRDANYALVGKQSHGQNEVHRRPSYDIGHCFTS*

>peptide 2 (45 aa)
MLIIQTITSSLVSVSTKNMCHPILLAKTDENDGSDMEKIPQLFCY*

>peptide 3 (55 aa)
MIGMNTTDQHLVLKERNSHKAKITPYGMSASKKAQGQLLLMGSVRELKWYSLRFKI

>peptide 4 (60 aa)
MKMMVVTWKRYHSYFVIDISKETENCNCQSVGLNVKYRNLPPTSCETSIAVLNKINFSDN*

Sequence

>CNT30221104
GGAGCTCATGCAATGCATGTTGGAGATTTATTCCAATAGTTGCATAATATGGTTCGAATGTTGTTGTTATATCTAGTTCAGTTAGATGCTTATTATCCAG
ACCATCACAAGTTCTTTAGTAAGTGTCTCTACTAAGAATATGTGTCATCCTATTCTACTAGCAAAAACCGATGAAAATGATGGTAGTGACATGGAAAAGA
TACCACAGCTATTTTGTTATTGATATAAGTAAAGAAACTGAAAATTGCAATTGTCAATCAGTGGGTCTTAATGTCAAATACAGGAATCTTCCACCCACTA
GCTGCGAGACATCCATTGCAGTGCTAAATAAAATAAACTTTTCCGATAATTAACAGCAAGACAATGGTCCGCTTGTTGTATATTATAAATATGGCACAGG
TGTTGTATATGTGTAGGCCGTGCTAGAATTTACATATGCATATATGCTCCACAACCTATGCTCGTACAAACACAGATCATAGAGATGCAAATTATGCTCT
AGTCGGAAAGCAGAGTCATGGACAAAATGAAGTTCACAGAAGACCTTCATACGACATAGGCCATTGTTTCACCTCGTAGTTTATGCCTTGCCGGACTCCT
CGCAACCCGGTGGCCTGAAGGCGATGAAGCTGACGCACTGCACCTGCCGCAGGTTGTCGAAGCCGATGATACGGACGTAGGCGTCAGGGTACTCCTTTTT
GACCTCCTCCACCTCATTGAGCACCTGTGTGGCGTCGGTTGTCGAAGCCGATGATACGGACGTAGGCGTCAGGGTACTCCTTTTTGACCTCCTCCACCTC
ATTGAGCACCTGTGTGGCGTCGGTGCACCCGAACATAGGCAGCTTCCACATTGTCCAGTATCGGCCGTCGTAGTACCCGGGGGAGCTGTTGTGCTCACGG
AAGACGAAGCCAACCTTGCTGAACTCCAGGCAGGGCACCCACTTGGAGCGGATCAGGTAGTCGACCTGCTTCAGGAGGGCCTCAGTGGAGAGGGGTGGCA
AGTAAGACAGGGTCTCGAACTTCTTGATGCCCTCAATCGGCCACACCTGAATGATTGGAATGAACACAACTGATCAACACTTAGTGCTTAAAGAAAGAAA
TAGCCATAAGGCAAAAATTACTCCTTATGGTATGTCCGCAAGCAAGAAAGCTCAAGGGCAGCTCTTGCTTATGGGTAGTGTACGGGAATTAAAATGGTAC
TCCCTCCGTTTCAAAATAAA