« Back to Hordeum vulgare search


Detailed information on CNT30221081


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673993Hordeum vulgareSetaria viridis22.0279.7996.41446forward
CNT30404925Hordeum vulgareBeta vulgaris13.4338.3190.44272reverse complement
CNT30525798Hordeum vulgarePhaseolus vulgaris12.4932.7794.07253reverse complement
CNT30712713Hordeum vulgareGlycine max3.9523.7486.2580reverse complement
CNT30177674Hordeum vulgareSecale cereale40.6440.5497.33823reverse complement
CNT30384202Hordeum vulgareTriticum turgidum31.3638.3597.8635reverse complement
CNT30555411Hordeum vulgareOryza glaberrima12.8964.7698.85261reverse complement
CNT30658798Hordeum vulgareTriticum dicoccoides15.1110098.37306reverse complement
CNT3017925Hordeum vulgareZea mays25.3344.9699.22513forward
CNT3067405Hordeum vulgareLeersia perrieri20.0598.0794.83406forward
CNT30647597Hordeum vulgareRosa chinensis15.4161.1893.59312forward
CNT30203328Hordeum vulgareHelianthus annuus24.4460.1595.76495forward
CNT30627901Hordeum vulgareDaucus carota15.2626.4181.88309reverse complement
CNT30684661Hordeum vulgareTriticum urartu40.6419.4598.91823reverse complement
CNT30720008Hordeum vulgareTriticum spelta7.1659.6799.31145forward
CNT30595932Hordeum vulgareOryza meridionalis15.2123.1897.08308reverse complement
CNT30371139Hordeum vulgareOryza glumipatula15.3662.8397.75311reverse complement
CNT30409295Hordeum vulgarePapaver somniferum23.684.695.19478forward
CNT30646085Hordeum vulgareCannabis sativa7.4134.488.67150forward
CNT30318666Hordeum vulgareAsparagus officinalis32.8975.7793.24666forward
CNT30149641Hordeum vulgareBrachypodium distachyon43.5643.7598.75882forward
CNT30102660Hordeum vulgareOryza rufipogon16.4989.395.81334forward
CNT30576588Hordeum vulgareOryza barthii6.4229.6199.23130reverse complement
CNT30604605Hordeum vulgareOryza punctata10.6793.5194.44216reverse complement
CNT30603109Hordeum vulgareGaldieria sulphuraria3.0123.3793.4461reverse complement

Expression of CNT30221081

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MGESLTEQCRVEVEGLRVVNFFSRRRNNDGI*

>peptide 2 (36 aa)
MISSWSERMISHTRTETRPRLLREAAVGNFPQWAKA*

>peptide 3 (30 aa)
MRPSHHAPYALGDTRATMGGTKGRNLARVS*

>peptide 4 (31 aa)
MKQESLVIAGQPYGGESVPGPCTHRPSHYRS*

>peptide 5 (40 aa)
MQALSGMIGRKASVGGFSSPPSNPRAQPWTGGGNYQAGVR*

>peptide 6 (41 aa)
MSPLWCGGMGMSKGKGWSFSRFWRSRPPFGRPARRAISSVVX

Sequence

>CNT30221081
CGGAGGAAGAGTGGCCTTGAGTTTCTCGCCCCTTTGCCTTAGGATTCGTTAATTCTCTTTCTCGATGGGACGGGGAAGGGATATAACTCAGCGGTAGAGT
GTCACCTTGACGTGGTGGAAGTCATCAGTTCGAGCCTGATTATCCCTAAACCCAATGTGAGTTTTTTATATTTTGACTTACTCCCCCGCCACGAGCGAAC
GAGAATGGATAAGAGGCTTGTGGGATTGACGTGATAGGGTAGGGTTGGCTATACTGCTGGTGGAGAACTCCAGGCTAATAATCTGAAGCGCATGGATACA
AGTTATCCTTGGAAGGAAAGAAAATTCCGAATCTGCTTTGTCTACGAATAAGGAAGCTATAAGTAATGTAACTATGAATCTCATGGAGAGTTTGATCCTG
GCTCAGGATGAACGCTGGCGGCATGCTTAACACATGCAAGTCGAACGGGAAGTGGTGTTTCCAGTGGCGAACGGGTGAGTAACGCGTAAGAACCTGCCCT
TGGGAGGGGAACAACAACTGGAAACGGTTGCTAATACCCCGTCGGCTGAGGAGCAAAAGGAGAAATCCGCCCAAGGAGGGGCTCGCGTCTGATTAGCTAG
TTGGTGAGGAAATAGCTTACCAAGGCGATGATCAGTAGCTGGTCCGAGAGGATGATCAGCCACACTAGGACTGAGACACGGCCCAGACTCCTACGGGAGG
CAGCAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGTGGAAGGCCTACGGGTCGTCAACTTCTTTTCTCGGAGAAGA
AACAATGACGGTATCTGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGCGTTATCCNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGTGGAAGGCCTACGGGTCGTCAACTTCTTTTCTCGGAGAAGAAACAATGA
CGGTATCTGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTGT
AGGTGGCTTTTCAAGTCCGCCGTCAAATCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGTAGGGGCAGAGGGAATTTCCG
GTGGTGCATGGCTGTCGTCAGCTCGTGCCGTAAGGTGTTGGGTTAAGTCTCGCAACGAGCGCAACCCTCGTGTTTAGTTGCCACTATGAGTTTGGAACCC
TGAACAGACCGCCGGTGTCAAGCCGGAGGAAGGAGAGGATGAGGCCAAGTCATCATGCCCCTTATGCCCTGGGCGACACACGTGCTACAATGGGCGGGAC
AAAGGGTCGCAATCTCGCGAGGGTGAGCTAACTCCAAAAACCCGTCCTCAGTTCGGATTGTAGGCTGCAACTCGCCTGCATGAAGCAGGAATCGCTAGTA
ATCGCCGGTCAGCCATACGGCGGTGAATCCGTTCCCGGGCCTTGTACACACCGCCCGTCACACTATAGGAGCTGACCATGTTTGAAGTCATTACCCTTAA
CCGTAAGGAGGGGGATGCCTAAGGCTAGGCTTGCGACTGGAGTGAAGTCGTAACAAGGTAGCCGTACTGGAAGGTGCGGCTGGATCACCTCCTTTTCAGG
GAGATCTAATGCTTATGCTTATTGGGTATTTTGGTTTGACACTTCTTCATGCCCAAAAAGAAGGCAGCTACGTCTGAGCTAAACTTGGATATGGAAGTCT
TCTTTTGTTTAGGGTGAAGTAAGACCAAGCTCATCAGCTTATTATCCTAGGTCGTAACAAATTAGTTGATAGTGATAGGATCCCTTTTTTGACGTCCCCA
TGTCCCCCCTGTGGTGTGGCGGCATGGGGATGTCAAAAGGAAAGGGATGGAGTTTTTCTCGCTTTTGGCGTAGCAGGCCTCCCTTTGGGAGGCCCGCGCG
ACGGGCTATTAGCTCAGTGGTANNN