Detailed information on CNT30221053


BLAST search results

BLAST vs Swiss-Prot:
sp|P26667|RBS2_WHEAT, E-value = 5e-25

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672859Hordeum vulgareSetaria viridis10.7234.5390.9177forward
CNT30437365Hordeum vulgareAegilops tauschii33.4369.7795240forward
CNT30657835Hordeum vulgareTriticum dicoccoides23.1259.593.98166forward
CNT30135654Hordeum vulgareLolium perenne1137.2691.1479forward
CNT30351340Hordeum vulgareEragrostis tef9.192387.8866reverse complement
CNT30597191Hordeum vulgareOryza meridionalis18.846.5588.15135forward
CNT30151090Hordeum vulgareBrachypodium distachyon13.3720.6588.5496forward
CNT30104556Hordeum vulgareOryza rufipogon12.9534.0787.193forward

Expression of CNT30221053

Peptides detected in this lncRNA

>peptide 1 (29 aa)
GALSWFSFGLVYGLHMLRIALAMCSGNTR*

>peptide 2 (32 aa)
MRSAARFQQDCEGVVVVCLLQGVLSLWISGRGV

>peptide 3 (40 aa)
MPSQYISPYAQRRSFPTRLRRGGRRLLVAGCLIPLDQRKRG

>peptide 4 (57 aa)
MHLDHTILGKNNNWFPYLHASDPSAIADAAEAGAAGAAADGEARGGLEPLEGGDGGG*

>peptide 5 (89 aa)
MIVRRCTLTIPSLAKIIIGFHTCMHLILPPLLTLLRPALPERRLTGRPAVDLSPWKGATVVAEEAITAGAMVVRKLLGGEPIASLAGYT*

Sequence

>CNT30221053
GTGGTGCACTATCTTGGTTTAGTTTTGGCCTGGTATATGGGTTACACATGCTAAGGATAGCTTTGGCTATGTGCAGTGGAAATACCCGATAAATTAACCA
ATTGTCCCGACAAGAACATTCATGTTAGCTTAGTGTTTGTCATCCTTTAGAAAAGAAAATCAAAAAGGAGGATAACACCGGCGGCATCTGCATCAAGCAA
TGCAGATTATCATTTTTATTATGTTTATTCAGTAAATCTAACAAAATAAATACAAAGACCAATTCAAAGCCACCATCCAAACAAACAAAGTCGCTACATT
TATAAATATATGATTGTGCGAAGATGCACCTTGACCATACCATCCTTGGCAAAAATAATAATTGGTTTCCATACCTGCATGCATCTGATCCTTCCGCCAT
TGCTGACGCTGCTGAGGCCGGCGCTGCCGGAGCGGCGGCTGACGGGGAGGCCCGCGGTGGACTTGAGCCCCTGGAAGGGGGCGACGGTGGTGGCTGAAGA
AGCCATCACGGCTGGGGCCATGGTGGTACGTAAATTGCTAGGTGGGGAGCCGATAGCTAGCTTGGCAGGCTACACTTGACTTGAGGCCCCCTCATGCCGT
CCCAGTATATATCACCGTATGCGCAGCGCCGCTCGTTTCCAACAAGATTGCGAAGGGGTGGTCGTCGTTTGCTTGTTGCAGGGTGTCTTATCCCTCTGGA
TCAGCGGAAGAGGGGTGG